CIBIV - Center for Integrative Bioinformatics Vienna

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IQ-TREEIQ-TREEPublic archive
Efficient phylogenomic software by maximum likelihood
C++ 194 44
NextGenMapNextGenMapPublic
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …
C++ 87 8
TeaserTeaserPublic
A tool to benchmark mappers and different parameters within minutes
HTML 44 10
trumicounttrumicountPublic
Correctly counting molecules using unique molecular identifiers (UMIs)
TeX 9 1
BODscoreBODscorePublic
Scoring method for identified SNPs
C 4
gwpcRgwpcRPublic
Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments
R 3

Repositories

Showing 10 of 19 repositories

EvoNAPS Public
EvoNAPS is a database providing input parameter settings for extensive sequence simulations to be used in phylogenetic studies.
Cibiv/EvoNAPS’s past year of commit activity
Python 2 3 0 0 UpdatedMar 12, 2025
pyrganoid Public
Cibiv/pyrganoid’s past year of commit activity
Python 10 0 0 UpdatedFeb 27, 2025
Cibiv.github.io Public
CIBIV website
Cibiv/Cibiv.github.io’s past year of commit activity
HTML 20 0 0 UpdatedFeb 20, 2025
GuaCAMOLE Public
GuaCAMOLE (Guanosine Cytosine Aware Metagenomic Opulence Least squares Estimation) algorithm for the efficient detection and removal of GC bias from metagenomic samples
Cibiv/GuaCAMOLE’s past year of commit activity
Python 1AGPL-3.00 0 0 UpdatedNov 12, 2024
SANjar Public
Simulates the deterministic and stochastic versions of the SAN model
Cibiv/SANjar’s past year of commit activity
R00 0 0 UpdatedFeb 9, 2024
ModelRevelator Public
Cibiv/ModelRevelator’s past year of commit activity
Python 1MIT 4 1 0 UpdatedMar 28, 2023
ipoolseq-pipeline Public
A pipeline for the analysis of iPool-Seq data
Cibiv/ipoolseq-pipeline’s past year of commit activity
Python0AGPL-3.0 1 0 0 UpdatedFeb 11, 2022
IQ-TREE Public archive
Efficient phylogenomic software by maximum likelihood
Cibiv/IQ-TREE’s past year of commit activity
C++ 194GPL-2.0 44 94 2 UpdatedNov 4, 2021
trumicount Public
Correctly counting molecules using unique molecular identifiers (UMIs)
Cibiv/trumicount’s past year of commit activity
TeX 9AGPL-3.0 1 2 0 UpdatedSep 24, 2021
gwpcR Public
Corrects UMI-based NGS data for phantom UMIs and lost molecules using a mechanistic model of UMI-based experiments
Cibiv/gwpcR’s past year of commit activity
R 3AGPL-3.00 0 0 UpdatedAug 23, 2021