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cptools2

Public

Running cellprofiler on eddie3 / SGE clusters

Python 5 5

ImageXpressR

Public

R package for extracting metadata from ImageXpress file paths

phenonaut

Public

A tool for exploration of multiomic phenotypic space

Python 9 2

sc_morph_tracking

Public

The script for article "Single-cell morphological tracking of cell states to identify small-molecule modulators of liver differentiation".

Showing 10 of 11 repositories

cptools2 Public
Running cellprofiler on eddie3 / SGE clusters
CarragherLab/cptools2’s past year of commit activity
Python 5 5 15 2 UpdatedDec 11, 2025
scissorhands Public
Generate eddie3 submission scripts in python
CarragherLab/scissorhands’s past year of commit activity
Python0MIT0 0 0 UpdatedOct 24, 2025
parserix Public
parse metadata from ImageXpress paths
CarragherLab/parserix’s past year of commit activity
Python00 0 0 UpdatedOct 24, 2025
sc_morph_tracking Public
The script for article "Single-cell morphological tracking of cell states to identify small-molecule modulators of liver differentiation".
CarragherLab/sc_morph_tracking’s past year of commit activity
R00 0 0 UpdatedAug 16, 2024
phenonaut Public
A tool for exploration of multiomic phenotypic space
CarragherLab/phenonaut’s past year of commit activity
Python 9Apache-2.0 2 0 0 UpdatedAug 5, 2024
install_cellprofiler Public
Documentation and scripts to install CellProfiler on eddie3
CarragherLab/install_cellprofiler’s past year of commit activity
Shell0 1 0 0 UpdatedApr 28, 2022
meld Public
Collect distributed cellprofiler results into sqlite databases.
CarragherLab/meld’s past year of commit activity
Python0 1 4 0 UpdatedNov 24, 2021
2018-08_transfer_ML_between_cell_lines Public
CarragherLab/2018-08_transfer_ML_between_cell_lines’s past year of commit activity
Python 3 1 1 0 UpdatedNov 8, 2018
cpchecker Public
Check for failed cellprofiler jobs on eddie3
CarragherLab/cpchecker’s past year of commit activity
Python00 0 0 UpdatedOct 3, 2018
CellProfiler Public Forked fromCellProfiler/CellProfiler
An open-source application for biological image analysis
CarragherLab/CellProfiler’s past year of commit activity
Python0 419 0 0 UpdatedSep 24, 2018

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