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Merge branch 'PancancerStates_Barkley' of gitlab.romualdi.bio.unipd.it:stefania/signifinder into PancancerStates_Barkley# Conflicts:#NAMESPACE

2 parents6b5d013 +27170df commit2911af4Copy full SHA for 2911af4

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`‎NAMESPACE‎`

Lines changed: 9 additions & 3 deletions

Original file line number	Diff line number	Diff line change
`@@ -1,5 +1,6 @@`
`1`	`1`	`# Generated by roxygen2: do not edit by hand`
`2`	`2`
	`3`	`+export(.barkleyFun)`
`3`	`4`	`export(ADOSign)`
`4`	`5`	`export(APMSign)`
`5`	`6`	`export(ASCSign)`
`@@ -22,13 +23,13 @@ export(LRRC15CAFSign)`
`22`	`23`	`export(MITFlowPTENnegSign)`
`23`	`24`	`export(MPSSign)`
`24`	`25`	`export(PassONSign)`
	`26`	`+export(SCSubtypeSign)`
`25`	`27`	`export(TGFBSign)`
`26`	`28`	`export(TLSSign)`
`27`	`29`	`export(TinflamSign)`
`28`	`30`	`export(VEGFSign)`
`29`	`31`	`export(autophagySign)`
`30`	`32`	`export(availableSignatures)`
`31`		`-export(breastStateSign)`
`32`	`33`	`export(cellCycleSign)`
`33`	`34`	`export(chemokineSign)`
`34`	`35`	`export(consensusOVSign)`
`@@ -38,21 +39,24 @@ export(expandedImmuneSign)`
`38`	`39`	`export(ferroptosisSign)`
`39`	`40`	`export(geneHeatmapSignPlot)`
`40`	`41`	`export(getSignGenes)`
`41`		`-export(glioCellStateSign)`
`42`	`42`	`export(glycolysisSign)`
`43`	`43`	`export(heatmapSignPlot)`
`44`	`44`	`export(hypoxiaSign)`
`45`	`45`	`export(immuneCytSign)`
`46`	`46`	`export(immunoScoreSign)`
	`47`	`+export(interferonSign)`
`47`	`48`	`export(lipidMetabolismSign)`
`48`	`49`	`export(matrisomeSign)`
`49`		`-export(melStateSign)`
	`50`	`+export(metalSign)`
`50`	`51`	`export(mitoticIndexSign)`
`51`	`52`	`export(multipleSign)`
`52`	`53`	`export(oneSignPlot)`
	`54`	`+export(oxphosSign)`
`53`	`55`	`export(pyroptosisSign)`
`54`	`56`	`export(ridgelineSignPlot)`
	`57`	`+export(stateSign)`
`55`	`58`	`export(stemCellCD49fSign)`
	`59`	`+export(stressSign)`
`56`	`60`	`export(survivalSignPlot)`
`57`	`61`	`import(SpatialExperiment)`
`58`	`62`	`import(ggplot2)`
`@@ -82,6 +86,7 @@ importFrom(cowplot,plot_grid)`
`82`	`86`	`importFrom(dplyr,group_by)`
`83`	`87`	`importFrom(dplyr,summarise_all)`
`84`	`88`	`importFrom(ensembldb,exonsBy)`
	`89`	`+importFrom(ggplot2,cut_number)`
`85`	`90`	`importFrom(ggridges,geom_density_ridges)`
`86`	`91`	`importFrom(ggridges,geom_density_ridges_gradient)`
`87`	`92`	`importFrom(grid,gpar)`
`@@ -91,6 +96,7 @@ importFrom(maxstat,maxstat.test)`
`91`	`96`	`importFrom(methods,is)`
`92`	`97`	`importFrom(openair,corPlot)`
`93`	`98`	`importFrom(org.Hs.eg.db,org.Hs.eg.db)`
	`99`	`+importFrom(scales,rescale)`
`94`	`100`	`importFrom(stats,cor)`
`95`	`101`	`importFrom(stats,median)`
`96`	`102`	`importFrom(stats,prcomp)`

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`‎NAMESPACE‎`

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