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@AlmaasLab

AlmaasLab

Network Systems Biology

Popular repositoriesLoading

  1. BiGMeCBiGMeCPublic

    BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor

    Jupyter Notebook 14 3

  2. AutoKEGGRecAutoKEGGRecPublic

    AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated r…

    MATLAB 8 2

  3. csdRcsdRPublic

    Efficient CSD implementation in R

    R 7 1

  4. micIntmicIntPublic

    R package for analyzing microbial co-occurences

    R 1

  5. T66-GEMT66-GEMPublic

    GEM for Aurantiochytrium sp. T66

    Python 1

  6. autopacmenautopacmenPublic

    Forked fromklamt-lab/autopacmen

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    HTML

Repositories

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Showing 10 of 11 repositories
  • csdR Public

    Efficient CSD implementation in R

    AlmaasLab/csdR’s past year of commit activity
    R 7GPL-3.0 1 0 0 UpdatedMar 19, 2025
  • AlmaasLab/elixir-galaxy-tools-systemsbiology’s past year of commit activity
    Python0GPL-3.00 0 0 UpdatedDec 12, 2024
  • AutoKEGGRec Public

    AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated reconstruction for a list of organisms. All reconstructions are based on data from KEGG.

    AlmaasLab/AutoKEGGRec’s past year of commit activity
    MATLAB 8GPL-3.0 2 0 0 UpdatedMar 21, 2024
  • autopacmen Public Forked fromklamt-lab/autopacmen

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    AlmaasLab/autopacmen’s past year of commit activity
    HTML0Apache-2.0 8 0 0 UpdatedJul 7, 2023
  • BayesianGEM Public Forked fromSysBioChalmers/BayesianGEM

    This repository contains code and data needed to replicate the analysis carried out in the manuscript Pettersen J and Almaas A. 2023.

    AlmaasLab/BayesianGEM’s past year of commit activity
    Jupyter Notebook0GPL-3.0 4 0 0 UpdatedJun 21, 2023
  • T66-GEM Public

    GEM for Aurantiochytrium sp. T66

    AlmaasLab/T66-GEM’s past year of commit activity
    Python 1CC-BY-4.00 0 0 UpdatedJun 13, 2023
  • BiGMeC Public

    BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor

    AlmaasLab/BiGMeC’s past year of commit activity
    Jupyter Notebook 14GPL-3.0 3 0 0 UpdatedMay 14, 2023
  • acidFBA Public
    AlmaasLab/acidFBA’s past year of commit activity
    MATLAB0GPL-3.00 0 0 UpdatedJul 22, 2022
  • micInt Public

    R package for analyzing microbial co-occurences

    AlmaasLab/micInt’s past year of commit activity
    R 10 0 0 UpdatedMar 10, 2022
  • AlmaasLab/SystemsBrewology’s past year of commit activity
    00 0 0 UpdatedJun 18, 2021

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