Package index

All functions

inv_powerlaw()neg_expo()

Dispersal kernels

GeoModel-class.model_ob

GeoModel class

`habitat_density<-`(<GeoNetwork>)

GeoNetwork

GeoRasters-class.rast_ro

GeoRaster class

GlobalRast-class.grast_ro

GlobalRast class

setmaps()

Gmap class

RiskMap-class

RiskMap class

connectivity()

Calculate and plot maps of habitat connectivity

dist_methods()

Distance methods supported

.indices()

Internal function to extract risk indices from a list of crop rasters.

geoscale_param()

Get geographical scales from the parameters

get_parameters()

Get Parameters

get_rasters()

Get rasters object from parameters See host object inget_parameters() orload_parameters().

global_scales()

Global geographical extent

gplot()

Plot a Raster* object

`habitat_density<-`()

Set the habitat density.

hci_diff()

Calculate difference map

hci_mean()

Calculate mean of habitat connectivity in a region

hci_variance()

Calculate variance of habitat connectivity in a region

load_parameters()

Load Parameters from YAML File

ndplot(<GeoNetwork>)

Network density

ndplot()

Network density plot

nn_sum()node_strength()betweeness()ev()degree()closeness()pagerank()

Calculation on network metrics a.k.a centralities.

reset_params()

Reset parameters.yaml

reso()

Get resolution value

risk_indices()

Get risk indices

sa_onrasters()msean_onrast()

Run sensitivity analysis

sean()msean()

Sensitivity analysis across maps of habitat connectivity

sensitivity_analysis()

Sensitivity analysis for habitat connectivity

set_global_scales()

Set global geographical extent

set_parameters()

Set Parameters

setmaps(<Gmap>)

Sets the map slots in the Gmap object.

setprops(<GeoModel>,<character>,<numeric>,<numeric>)

Set properties of the GeoModel object.

setprops()

Set properties of the GeoModel object.

supported_metrics()

Returns metrics currently supported in the analysis.