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ZEB2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

ZEB2
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2DA7

Identifiers
AliasesZEB2, HSPC082, SIP-1, SIP1, SMADIP1, ZFHX1B, zinc finger E-box binding homeobox 2
External IDsOMIM:605802;MGI:1344407;HomoloGene:8868;GeneCards:ZEB2;OMA:ZEB2 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for ZEB2
Genomic location for ZEB2
Band2q22.3Start144,364,364bp[1]
End144,521,057bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for ZEB2
Genomic location for ZEB2
Band2|2 BStart44,873,644bp[2]
End45,007,407bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sural nerve

  • monocyte

  • C1 segment

  • Achilles tendon

  • corpus callosum

  • internal globus pallidus

  • inferior ganglion of vagus nerve

  • epithelium of colon

  • granulocyte

  • amygdala
Top expressed in
  • Rostral migratory stream

  • stroma of bone marrow

  • umbilical cord

  • human fetus

  • dentate gyrus

  • iris

  • dentate gyrus of hippocampal formation granule cell

  • subdivision of hippocampus

  • Region I of hippocampus proper

  • body of femur
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9839

24136

Ensembl

ENSG00000169554

ENSMUSG00000026872

UniProt

O60315

Q9R0G7

RefSeq (mRNA)

NM_001171653
NM_014795

NM_015753
NM_001289521
NM_001355288
NM_001355289
NM_001355290

NM_001355291

RefSeq (protein)

NP_001165124
NP_055610

NP_001276450
NP_056568
NP_001342217
NP_001342218
NP_001342219

NP_001342220

Location (UCSC)Chr 2: 144.36 – 144.52 MbChr 2: 44.87 – 45.01 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zinc finger E-box-binding homeobox 2 is aprotein that in humans is encoded by theZEB2gene.[5] The ZEB2 protein is atranscription factor that plays a role in thetransforming growth factor β (TGFβ) signaling pathways that are essential during early fetal development.[6]

Function

[edit]

ZEB2 (previously also known as SMADIP1, SIP1) and its mammalian paralogZEB1 belongs to the Zeb family within the ZF (zinc finger) class of homeodomain transcription factors. ZEB2 protein has 8 zinc fingers and 1 homeodomain.[7] The structure of the homeodomain shown on the right.

ZEB2 interacts with receptor-mediated, activated full-lengthSMADs.[5] The activation of TGFβ receptors brings about the phosphorylation of intracellular effector molecules, R-SMADs. ZEB2 is an R-SMAD-binding protein and acts as a transcriptional corepressor. It is involved in the timing of the conversion ofneuroepithelial cells intoradial glial cells in early development, a mechanism thought to allow for the large differences inbrain size between humans and other mammals.[8]

ZEB2 transcripts are found in tissues differentiated from theneural crest such as thecranial nerve ganglia,dorsal root ganglia,sympathetic ganglionic chains, theenteric nervous system andmelanocytes. ZEB2 is also found in tissues that are not derived from the neural crest, including the wall of the digestive tract, kidneys, and skeletal muscles.

Clinical significance

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Mutations in theZEB2 gene are associated with theMowat–Wilson syndrome. This disease exhibitsmutations and even complete deletions of theZEB2 gene. Mutations of the gene can cause the gene to produce nonfunctional ZEB2 proteins or inactivate the function of the gene as a whole. These deficits of ZEB2 protein interfere with the development of many organs. Many of the symptoms can be explained by the irregular development of the structures from the neural crest.[9]

Hirschsprung's disease also has many symptoms that can be explained by lack of ZEB2 during development of the digestive tract nerves. This disease causes severe constipation and enlargement of the colon.[10]

The risk of hepatocellular carcinoma and cirrhosis in chronichepatitis B has been reported to be associated with asingle-nucleotide polymorphism in the promoter region ofZEB2, designated rs3806475, under a recessive model of inheritance.[11]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000169554Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000026872Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: ZEB2 zinc finger E-box binding homeobox 2".
  6. ^Bassez G, Camand OJ, Cacheux V, Kobetz A, Dastot-Le Moal F, Marchant D, et al. (March 2004). "Pleiotropic and diverse expression of ZFHX1B gene transcripts during mouse and human development supports the various clinical manifestations of the "Mowat-Wilson" syndrome".Neurobiology of Disease.15 (2):240–50.doi:10.1016/j.nbd.2003.10.004.PMID 15006694.S2CID 25770329.
  7. ^Bürglin TR, Affolter M (June 2016)."Homeodomain proteins: an update".Chromosoma.125 (3):497–521.doi:10.1007/s00412-015-0543-8.PMC 4901127.PMID 26464018.
  8. ^Benito-Kwiecinski S, Giandomenico SL, Sutcliffe M, Riis ES, Freire-Pritchett P, Kelava I, et al. (April 2021)."An early cell shape transition drives evolutionary expansion of the human forebrain".Cell.184 (8): 2084–2102.e19.doi:10.1016/j.cell.2021.02.050.PMC 8054913.PMID 33765444.
  9. ^Dastot-Le Moal F, Wilson M, Mowat D, Collot N, Niel F, Goossens M (April 2007). "ZFHX1B mutations in patients with Mowat-Wilson syndrome".Human Mutation.28 (4):313–21.doi:10.1002/humu.20452.PMID 17203459.S2CID 37981110.
  10. ^Saunders CJ, Zhao W, Ardinger HH (November 2009). "Comprehensive ZEB2 gene analysis for Mowat-Wilson syndrome in a North American cohort: a suggested approach to molecular diagnostics".American Journal of Medical Genetics Part A.149A (11):2527–31.doi:10.1002/ajmg.a.33067.PMID 19842203.S2CID 22472646.
  11. ^Liu WX, Yang L, Yan HM, Yan LN, Zhang XL, Ma N, et al. (2021). Argentiero A, Mehta R, Wang S (eds.)."Germline Variants and Genetic Interactions of Several EMT Regulatory Genes Increase the Risk of HBV-Related Hepatocellular Carcinoma".Frontiers in Oncology.11 564477.doi:10.3389/fonc.2021.564477.PMC 8226114.PMID 34178612. This article incorporates text from this source, which is available under theCC BY 4.0 license.

Further reading

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External links

[edit]
PDB gallery
  • 2da7: Solution structure of the homeobox domain of Zinc finger homeobox protein 1b (Smad interacting protein 1)
    2da7: Solution structure of the homeobox domain of Zinc finger homeobox protein 1b (Smad interacting protein 1)
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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