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ZEB1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
ZEB1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2E19

Identifiers
AliasesZEB1, zinc finger E-box binding homeobox 1, AREB6, BZP, DELTAEF1, FECD6, NIL2A, PPCD3, TCF8, ZFHEP, ZFHX1A
External IDsOMIM:189909;MGI:1344313;HomoloGene:31779;GeneCards:ZEB1;OMA:ZEB1 - orthologs
Gene location (Human)
Chromosome 10 (human)
Chr.Chromosome 10 (human)[1]
Chromosome 10 (human)
Genomic location for ZEB1
Genomic location for ZEB1
Band10p11.22Start31,318,495bp[1]
End31,529,814bp[1]
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[2]
Chromosome 18 (mouse)
Genomic location for ZEB1
Genomic location for ZEB1
Band18 4.42 cM|18 A1Start5,591,860bp[2]
End5,775,467bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • epithelium of colon

  • decidua

  • optic nerve

  • glutes

  • endothelial cell

  • Skeletal muscle tissue of rectus abdominis

  • biceps brachii

  • tendon of biceps brachii

  • Skeletal muscle tissue of biceps brachii
Top expressed in
  • internal carotid artery

  • substantia nigra

  • motor neuron

  • external carotid artery

  • semi-lunar valve

  • carotid body

  • ascending aorta

  • Rostral migratory stream

  • suprachiasmatic nucleus

  • Gonadal ridge
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6935

21417

Ensembl

ENSG00000148516

ENSMUSG00000024238

UniProt

P37275

Q64318

RefSeq (mRNA)
NM_001128128
NM_001174093
NM_001174094
NM_001174095
NM_001174096

NM_030751
NM_001323638
NM_001323641
NM_001323642
NM_001323643
NM_001323644
NM_001323645
NM_001323646
NM_001323647
NM_001323648
NM_001323649
NM_001323650
NM_001323651
NM_001323652
NM_001323653
NM_001323654
NM_001323655
NM_001323656
NM_001323657
NM_001323658
NM_001323659
NM_001323660
NM_001323661
NM_001323662
NM_001323663
NM_001323664
NM_001323665
NM_001323666
NM_001323671
NM_001323672
NM_001323673
NM_001323674
NM_001323675
NM_001323676
NM_001323677
NM_001323678

NM_011546
NM_001360981
NM_001360982

RefSeq (protein)
NP_001121600
NP_001167564
NP_001167565
NP_001167566
NP_001167567

NP_001310567
NP_001310570
NP_001310571
NP_001310572
NP_001310573
NP_001310574
NP_001310575
NP_001310576
NP_001310577
NP_001310578
NP_001310579
NP_001310580
NP_001310581
NP_001310582
NP_001310583
NP_001310584
NP_001310585
NP_001310586
NP_001310587
NP_001310588
NP_001310589
NP_001310590
NP_001310591
NP_001310592
NP_001310593
NP_001310594
NP_001310595
NP_001310600
NP_001310601
NP_001310602
NP_001310603
NP_001310604
NP_001310605
NP_001310606
NP_001310607
NP_110378

NP_035676
NP_001347910
NP_001347911

Location (UCSC)Chr 10: 31.32 – 31.53 MbChr 18: 5.59 – 5.78 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Zinc finger E-box-binding homeobox 1 is aprotein that in humans is encoded by theZEB1gene.[5][6][7]

ZEB1 (previously known as TCF8) encodes azinc finger andhomeodomaintranscription factor that represses T-lymphocyte-specificIL2 gene expression by binding to a negative regulatory domain 100 nucleotides 5-prime of the IL2transcription start site.[7][6] ZEB1 and its mammalian paralogZEB2 belongs to the Zeb family within the ZF (zinc finger) class of homeodomain transcription factors. ZEB1 protein has seven zinc fingers and one homeodomain.[8] The structure of the homeodomain is shown on the right.

Clinical significance

[edit]

Mutations of the gene are linked toposterior polymorphous corneal dystrophy 3. ZEB1 downregulatesE-cadherin and inducesepithelial to mesenchymal transition in breast and other carcinomas[9] A recent study suggested its contributing role inlung cancer invasiveness and metastasis development.[10] Overexpression of ZEB1 has been identified as a potential risk factor for recurrence and poor prognosis in several types of cancers.[11]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000148516Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000024238Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Williams TM, Montoya G, Wu Y, Eddy RL, Byers MG, Shows TB (September 1992). "The TCF8 gene encoding a zinc finger protein (Nil-2-a) resides on human chromosome 10p11.2".Genomics.14 (1):194–6.doi:10.1016/S0888-7543(05)80307-6.PMID 1427828.
  6. ^abWilliams TM, Moolten D, Burlein J, Romano J, Bhaerman R, Godillot A, Mellon M, Rauscher FJ, Kant JA (December 1991). "Identification of a zinc finger protein that inhibits IL-2 gene expression".Science.254 (5039):1791–4.Bibcode:1991Sci...254.1791W.doi:10.1126/science.1840704.PMID 1840704.
  7. ^ab"Entrez Gene: ZEB1 zinc finger E-box binding homeobox 1".
  8. ^Bürglin TR, Affolter M (July 2016)."Homeodomain proteins: an update".Chromosoma.125 (3):497–521.doi:10.1007/s00412-015-0543-8.PMC 4901127.PMID 26464018.
  9. ^Eger A, Aigner K, Sonderegger S, Dampier B, Oehler S, Schreiber M, Berx G, Cano A, Beug H, Foisner R (March 2005)."DeltaEF1 is a transcriptional repressor of E-cadherin and regulates epithelial plasticity in breast cancer cells".Oncogene.24 (14):2375–85.doi:10.1038/sj.onc.1208429.PMID 15674322.
  10. ^Liu W, Huang YJ, Liu C, Yang YY, Liu H, Cui JG, Cheng Y, Gao F, Cai JM, Li BL (April 2014)."Inhibition of TBK1 attenuates radiation-induced epithelial-mesenchymal transition of A549 human lung cancer cells via activation of GSK-3β and repression of ZEB1".Laboratory Investigation; A Journal of Technical Methods and Pathology.94 (4):362–70.doi:10.1038/labinvest.2013.153.PMID 24468793.
  11. ^Lu J, Fei F, Wu C, Mei J, Xu J, Lu P (September 2022)."ZEB1: Catalyst of immune escape during tumor metastasis".Biomed Pharmacother.153 113490.doi:10.1016/j.biopha.2022.113490.PMID 36076506.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 2e19: Solution structure of the homeobox domain from human NIL-2-A zinc finger protein, transcription factor 8
    2e19: Solution structure of the homeobox domain from human NIL-2-A zinc finger protein, transcription factor 8
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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