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Vitamin D-binding protein

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens
GC
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1J78,1J7E,1KW2,1KXP,1LOT,1MA9

Identifiers
AliasesGC, DBP, DBP/GRD3, HEL-S-51, VDBG, VDBP, Gc-MAF, GcMAF, vitamin D binding protein, DBP-maf, VDB, GC vitamin D binding protein
External IDsOMIM:139200;MGI:95669;HomoloGene:486;GeneCards:GC;OMA:GC - orthologs
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for GC
Genomic location for GC
Band4q13.3Start71,741,696bp[1]
End71,804,041bp[1]
Gene location (Mouse)
Chromosome 5 (mouse)
Chr.Chromosome 5 (mouse)[2]
Chromosome 5 (mouse)
Genomic location for GC
Genomic location for GC
Band5 E1|5 44.32 cMStart89,565,381bp[2]
End89,605,757bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • liver

  • right lobe of liver

  • gallbladder

  • pancreatic ductal cell

  • beta cell

  • duodenum

  • body of pancreas

  • jejunal mucosa

  • testicle

  • gonad
Top expressed in
  • left lobe of liver

  • gallbladder

  • islet of Langerhans

  • fetal liver hematopoietic progenitor cell

  • human fetus

  • right kidney

  • human kidney

  • sexually immature organism

  • morula

  • stomach
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2638

14473

Ensembl

ENSG00000145321

ENSMUSG00000035540

UniProt

P02774

P21614

RefSeq (mRNA)

NM_000583
NM_001204306
NM_001204307

NM_008096

RefSeq (protein)

NP_000574
NP_001191235
NP_001191236

NP_032122

Location (UCSC)Chr 4: 71.74 – 71.8 MbChr 5: 89.57 – 89.61 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Vitamin D-binding protein (DBP), also/originally known asgc-globulin (group-specificcomponent), is aprotein that in humans is encoded by theGCgene.[5][6] DBP is genetically the oldest member of thealbuminoid family and appeared early in the evolution of vertebrates.[7]

Structure

[edit]

Human GC is a glycosylatedalpha-globulin, ~58 kDa in size. Its 458 amino acids are coded for by 1690 nucleotides on chromosome 4 (4q11–q13). The primary structure contains 28 cysteine residues forming multiple disulfide bonds. GC contains 3 domains. Domain 1 is composed of 10 alpha helices, domain 2 of 9, and domain 3 of 4.[8]

Function

[edit]

Vitamin D-binding protein belongs to thealbumin gene family, together withhuman serum albumin andalpha-fetoprotein. It is a multifunctional protein found in plasma,ascitic fluid,cerebrospinal fluid and on the surface of many cell types.

It is able to bind the various forms ofvitamin D includingergocalciferol (vitamin D2) andcholecalciferol (vitamin D3), the 25-hydroxylated forms (calcifediol), and the active hormonal product, 1,25-dihydroxyvitamin D (calcitriol). The major proportion of vitamin D in blood is bound to this protein. It transports vitamin D metabolites between skin, liver and kidney, and then on to the various target tissues.[6][9]

Beyond acting as the carrier protein for vitamin D and its metabolites, DBP also transportsfree fatty acids,[10] binds toactin[11] and may help prevent actin polymerization during tissue injury.[12] It also might serve as a macrophage activator, contributing to the inflammatory response by modulating T-cell activity.[13]

AsGc protein-derived macrophage activating factor it is aMacrophage Activating Factor (MAF) that has been tested for use as a cancer treatment that would activatemacrophages against cancer cells.[14]

Interactive pathway map

[edit]

Click on genes, proteins and metabolites below to link to respective articles.[§ 1]

  1. ^The interactive pathway map can be edited at WikiPathways:"VitaminDSynthesis_WP1531".

Production

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It is synthesized byhepatic parenchymal cells and secreted into theblood circulation.[9]

Regulation

[edit]

The transcription factorsHFN1α is a positive regulator whileHFN1β is a dominant negative regulator of DBP expression.[15]

Evolution

[edit]

Phylogenetic analyses suggest that DBP diverged from ancestral albumin through gene duplication events that occurred after the separation of jawless fish (cyclostomes) from jawed vertebrates approximately 450 million years ago.[16] This timeline is supported by the apparent absence of DBP-like proteins in lampreys and hagfish, though these organisms retain vitamin D transport capability through alternative lipoprotein-mediated mechanisms.[17] DBP is found throughout jawed vertebrates, from bony fish to mammals, suggesting its evolution coincided with the development of calcified skeletons and more sophisticated calcium homeostasis requirements.[18]

Variation

[edit]

Many genetic variants of theGC gene are known. They produce 6 mainhaplotypes and 3 main protein variants (Gc1S, Gc1F and Gc2).[19] The genetic variations are associated with differences in circulating 25-hydroxyvitamin D levels.[20] They have been proposed to account for some of the differences in vitamin D status in different ethnic groups,[21] and have been found to correlate with the response to vitamin D supplementation.[19]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000145321Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000035540Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Mikkelsen M, Jacobsen P, Henningsen K (Jul 1977). "Possible localization of Gc-System on chromosome 4. Loss of long arm 4 material associated with father-child incompatibility within the Gc-System".Human Heredity.27 (2):105–7.doi:10.1159/000152857.PMID 558959.
  6. ^ab"Entrez Gene: GC group-specific component (vitamin D binding protein)".
  7. ^Bouillon, R.; Schuit, F.; Antonio, L.; Rastinejad, F. (2020)."Vitamin D Binding Protein: A Historic Overview".Frontiers in Endocrinology.10: 910.doi:10.3389/fendo.2019.00910.PMC 6965021.PMID 31998239.
  8. ^Verboven C, Rabijns A, De Maeyer M, Van Baelen H, Bouillon R, De Ranter C (February 2002). "A structural basis for the unique binding features of the human vitamin D-binding protein".Nature Structural Biology.9 (2):131–6.doi:10.1038/nsb754.PMID 11799400.S2CID 38990672.
  9. ^abNorman AW (August 2008)."From vitamin D to hormone D: fundamentals of the vitamin D endocrine system essential for good health".The American Journal of Clinical Nutrition.88 (2):491S –499S.doi:10.1093/ajcn/88.2.491S.PMID 18689389.
  10. ^Williams, Merfyn H.; Van Alstyne, Eldwin L.; Galbraith, Robert M. (1988)."Evidence of a novel association of unsaturated fatty acids with Gc (Vitamin D-binding protein)".Biochemical and Biophysical Research Communications.153 (3):1019–1024.doi:10.1016/S0006-291X(88)81330-5.
  11. ^Van Baelen, H.; Bouillon, R.; De Moor, P. (1980)."Vitamin D-binding protein (Gc-globulin) binds actin".Journal of Biological Chemistry.255 (6):2270–2272.doi:10.1016/S0021-9258(19)85885-4.
  12. ^Meier, Ursula; Gressner, Olav; Lammert, Frank; Gressner, Axel M (2006-07-01)."Gc-Globulin: Roles in Response to Injury".Clinical Chemistry.52 (7):1247–1253.doi:10.1373/clinchem.2005.065680.ISSN 0009-9147.
  13. ^Delanghe, Joris R.; Speeckaert, Reinhart; Speeckaert, Marijn M. (2015)."Behind the scenes of vitamin D binding protein: More than vitamin D binding".Best Practice & Research Clinical Endocrinology & Metabolism.29 (5):773–786.doi:10.1016/j.beem.2015.06.006.
  14. ^Yamamoto N, Suyama H, Yamamoto N (July 2008)."Immunotherapy for Prostate Cancer with Gc Protein-Derived Macrophage-Activating Factor, GcMAF"([PDF]).Translational Oncology.1 (2):65–72.doi:10.1593/tlo.08106.PMC 2510818.PMID 18633461.
  15. ^Bouillon R, Schuit F, Antonio L, Rastinejad F (2019)."Vitamin D Binding Protein: A Historic Overview".Frontiers in Endocrinology.10: 910.doi:10.3389/fendo.2019.00910.PMC 6965021.PMID 31998239.
  16. ^Gray, Jeffrey E.; Doolittle, Russell F. (1992)."Characterization, primary structure, and evolution of lamprey plasma albumin".Protein Science.1 (2):289–302.doi:10.1002/pro.5560010211.ISSN 0961-8368.PMC 2142188.PMID 1304910.
  17. ^Hay, A.W.M.; Watson, G. (1976)."The plasma transport proteins of 25-hydroxycholecalciferol in fish, amphibians, reptiles and birds".Comparative Biochemistry and Physiology Part B: Comparative Biochemistry.53 (2):167–172.doi:10.1016/0305-0491(76)90029-8.
  18. ^Andreeva, A. M. (2022)."Evolutionary Transformations of Albumin Using the Example of Model Species of Jawless Agnatha and Bony Jawed Fish (Review)".Inland Water Biology.15 (5):641–658.doi:10.1134/S1995082922050029.ISSN 1995-0829.
  19. ^abMalik S, Fu L, Juras DJ, Karmali M, Wong BY, Gozdzik A, Cole DE (January–February 2013)."Common variants of the vitamin D binding protein gene and adverse health outcomes".Critical Reviews in Clinical Laboratory Sciences.50 (1):1–22.doi:10.3109/10408363.2012.750262.PMC 3613945.PMID 23427793.
  20. ^McGrath JJ, Saha S, Burne TH, Eyles DW (July 2010). "A systematic review of the association between common single nucleotide polymorphisms and 25-hydroxyvitamin D concentrations".The Journal of Steroid Biochemistry and Molecular Biology.121 (1–2):471–7.doi:10.1016/j.jsbmb.2010.03.073.PMID 20363324.S2CID 20057294.
  21. ^Powe CE, Evans MK, Wenger J, Zonderman AB, Berg AH, Nalls M, Tamez H, Zhang D, Bhan I, Karumanchi SA, Powe NR, Thadhani R (November 2013)."Vitamin D-binding protein and vitamin D status of black Americans and white Americans".The New England Journal of Medicine.369 (21):1991–2000.doi:10.1056/NEJMoa1306357.PMC 4030388.PMID 24256378.

Further reading

[edit]

External links

[edit]
  • Overview of all the structural information available in thePDB forUniProt:P02774 (Vitamin D-binding protein) at thePDBe-KB.


PDB gallery
  • 1j78: Crystallographic analysis of the human vitamin D binding protein
    1j78: Crystallographic analysis of the human vitamin D binding protein
  • 1j7e: A Structural Basis for the Unique Binding Features of the Human Vitamin D-binding Protein
    1j7e: A Structural Basis for the Unique Binding Features of the Human Vitamin D-binding Protein
  • 1kw2: CRYSTAL STRUCTURE OF UNCOMPLEXED VITAMIN D-BINDING PROTEIN
    1kw2: CRYSTAL STRUCTURE OF UNCOMPLEXED VITAMIN D-BINDING PROTEIN
  • 1kxp: CRYSTAL STRUCTURE OF HUMAN VITAMIN D-BINDING PROTEIN IN COMPLEX WITH SKELETAL ACTIN
    1kxp: CRYSTAL STRUCTURE OF HUMAN VITAMIN D-BINDING PROTEIN IN COMPLEX WITH SKELETAL ACTIN
  • 1lot: CRYSTAL STRUCTURE OF THE COMPLEX OF ACTIN WITH VITAMIN D-BINDING PROTEIN
    1lot: CRYSTAL STRUCTURE OF THE COMPLEX OF ACTIN WITH VITAMIN D-BINDING PROTEIN
  • 1ma9: Crystal structure of the complex of human vitamin D binding protein and rabbit muscle actin
    1ma9: Crystal structure of the complex of human vitamin D binding protein and rabbit muscle actin
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