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Tyrosine aminotransferase

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens

Tyrosine transaminase
Human tyrosine aminotransferase (rainbow colored,N-terminus = blue,C-terminus = red) complexed withpyridoxal phosphate (space-filling model).[1]
Identifiers
EC no.2.6.1.5
CAS no.9014-55-5
Databases
IntEnzIntEnz view
BRENDABRENDA entry
ExPASyNiceZyme view
KEGGKEGG entry
MetaCycmetabolic pathway
PRIAMprofile
PDB structuresRCSB PDBPDBePDBsum
Gene OntologyAmiGO /QuickGO
Search
PMCarticles
PubMedarticles
NCBIproteins
TAT
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

3DYD

Identifiers
AliasesTAT, Tat, tyrosine aminotransferase
External IDsOMIM:613018;MGI:98487;HomoloGene:37293;GeneCards:TAT;OMA:TAT - orthologs
EC number2.6.1.5
Gene location (Human)
Chromosome 16 (human)
Chr.Chromosome 16 (human)[2]
Chromosome 16 (human)
Genomic location for TAT
Genomic location for TAT
Band16q22.2Start71,565,660bp[2]
End71,577,092bp[2]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[3]
Chromosome 8 (mouse)
Genomic location for TAT
Genomic location for TAT
Band8 D3|8 57.38 cMStart110,717,069bp[3]
End110,726,435bp[3]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • buccal mucosa cell

  • testicle

  • tendon of biceps brachii

  • lactiferous duct

  • secondary oocyte

  • mucosa of transverse colon

  • pancreatic ductal cell

  • islet of Langerhans

  • skin of thigh
Top expressed in
  • left lobe of liver

  • gallbladder

  • blastocyst

  • morula

  • embryo

  • islet of Langerhans

  • left colon

  • sexually immature organism

  • thoracic diaphragm

  • ileum
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6898

234724

Ensembl

ENSG00000198650

ENSMUSG00000001670

UniProt

P17735

Q8QZR1

RefSeq (mRNA)

NM_000353

NM_146214

RefSeq (protein)

NP_000344

NP_666326

Location (UCSC)Chr 16: 71.57 – 71.58 MbChr 8: 110.72 – 110.73 Mb
PubMed search[4][5]
Wikidata
View/Edit HumanView/Edit Mouse

Tyrosine aminotransferase (ortyrosine transaminase) is an enzyme present in the liver and catalyzes the conversion oftyrosine to4-hydroxyphenylpyruvate.[6]

L-tyrosine +2-oxoglutarate{\displaystyle \rightleftharpoons }4-hydroxyphenylpyruvate +L-glutamate

In humans, the tyrosine aminotransferase protein is encoded by theTATgene.[7] A deficiency of the enzyme in humans can result in what is known astype II tyrosinemia, wherein there is an abundance of tyrosine as a result of tyrosine failing to undergo an aminotransferase reaction to form 4-hydroxyphenylpyruvate.[8]

Function

[edit]

Tyrosine aminotransferase (TAT) is apyridoxal phosphate (PLP)-dependent enzyme that catalyzes the first and rate-limiting step in the degradation of the amino acidtyrosine, transferring its amino group toα-ketoglutarate to produce4-hydroxyphenylpyruvate andglutamate.[9] This reaction is essential for tyrosine catabolism and energy production, as the resulting products feed into thecitric acid cycle.[10] TAT is predominantly expressed in the liver but is also present in other tissues, where it maintains narrow substrate specificity, favoring tyrosine over other aromatic amino acids such as phenylalanine.[9] Structurally, TAT contains a central catalytic core and a PLP-binding site critical for its enzymatic function.[11]

Structure

[edit]
Ribbon diagram of the tyrosine aminotransferasedimer. The prosthetic group PLP is visible in bothmonomers.[12]

Tyrosine aminotransferase is a dimeric enzyme composed of two identical subunits, each containing a central catalytic core and a smaller domain formed by both amino- and carboxyl-terminal regions.[11] The enzyme's active site features a lysine residue (Lys280 in humans) that forms a Schiff base with the pyridoxal phosphate (PLP) cofactor, which is essential for its transaminase activity.[11] Structural studies, including crystallography, reveal that the PLP cofactor is stabilized within the active site through interactions with nonpolar amino acid side chains and hydrogen bonding, facilitating precise substrate positioning and catalysis.[13] Additionally, the carboxyl terminus contains hydrophilic, glutamate-rich segments resembling PEST sequences, which may contribute to the enzyme's rapid degradation rate.[11] The overall architecture of tyrosine aminotransferase aligns it with the aminotransferase superfamily, sharing conserved residues critical for function and substrate specificity.[11]

Mechanism

[edit]
Mechanism of catalysis

Structures of the three main molecules involved in chemical reaction catalyzed by the tyrosine aminotransferase enzyme are shown below: the amino acidtyrosine (left), theprosthetic grouppyridoxal phosphate (right), and the resulting product4-hydroxyphenylpyruvate (center).

Each side of the dimer protein includes pyridoxal phosphate (PLP) bonded to theLys280 residue of the tyrosine aminotransferase molecule. The amine group of tyrosine attacks the alpha carbon of the imine bonded to Lys280, forming a tetrahedral complex and then kicking off the LYS-ENZ. This process is known as transimination by the act of switching out the imine group bonded to PLP. The newly formed PLP-TYR molecule is then attacked by a base.

A possible candidate for the base in the mechanism could be Lys280 that was just pushed off of PLP, which sequesters the newly formed amino group of the PLP-TYR molecule. In a similar mechanism ofaspartate transaminase, the lysine that forms the initial imine to PLP later acts as the base that attacks the tyrosine in transimination. The electrons left behind from the loss of the proton move down to form a new double bond to the imine, which in turn pushes the already double bonded electrons through PLP and end up as a lone pair on the positively charged nitrogen in the six-membered ring of the molecule. Water attacks the alpha carbon of the imine of PLP-TYR and throughacyl substitution kicks off the nitrogen of PLP and forming pyridoxamine phosphate (PMP) and 4-hydroxyphenylpyruvate.

PMP is then regenerated into PLP by transferring its amine group to alpha-ketoglutarate, reforming its aldehyde functional group. This is followed by another substitution reaction with the Lys280 residue to reform its imine linkage to the enzyme, forming ENZ-PLP.

Clinical significance

[edit]

Deficiency of TAT activity leads to tyrosinemia type II, a metabolic disorder marked by elevated blood tyrosine levels and symptoms including keratitis, skin lesions, and neurological impairment.[14]

Tyrosinemia is the most common metabolic disease associated with tyrosine aminotransferase. The disease results from a deficiency in hepatic tyrosine aminotransferase.[15] Tyrosinemia type II (Richner-Hanhart syndrome, RHS) is a disease of autosomal recessive inheritance characterized by keratitis, palmoplantar hyperkeratosis, mental retardation, and elevated blood tyrosine levels.[15] Keratitis in Tyrosinemia type II patients is caused by the deposition of tyrosine crystals in the cornea and results in corneal inflammation.[16] The TAT gene is located on human chromosome 16q22-24 and extends over 10.9 kilobases (kb) containing 12 exons, and its 3.0 kb mRNA codes for a 454-amino acid protein of 50.4 kDa.[17] Twelve different TAT gene mutations have been reported.[17]

References

[edit]
  1. ^PDB:3DYD​;Karlberg T, Moche M, Andersson J (2008). "Human tyrosine aminotransferase".Protein Data Bank.doi:10.2210/pdb3dyd/pdb.
  2. ^abcGRCh38: Ensembl release 89: ENSG00000198650Ensembl, May 2017
  3. ^abcGRCm38: Ensembl release 89: ENSMUSG00000001670Ensembl, May 2017
  4. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  6. ^Dietrich JB (April 1992). "Tyrosine aminotransferase: a transaminase among others?".Cellular and Molecular Biology.38 (2):95–114.PMID 1349265.
  7. ^Zea-Rey AV, Cruz-Camino H, Vazquez-Cantu DL, Gutiérrez-García VM, Santos-Guzmán J, Cantú-Reyna C (27 November 2017)."The Incidence of Transient Neonatal Tyrosinemia Within a Mexican Population".Journal of Inborn Errors of Metabolism and Screening.5: 232640981774423.doi:10.1177/2326409817744230.
  8. ^Rettenmeier R, Natt E, Zentgraf H, Scherer G (July 1990)."Isolation and characterization of the human tyrosine aminotransferase gene".Nucleic Acids Research.18 (13):3853–3861.doi:10.1093/nar/18.13.3853.PMC 331086.PMID 1973834.
  9. ^abSivaraman S, Kirsch JF (May 2006). "The narrow substrate specificity of human tyrosine aminotransferase--the enzyme deficient in tyrosinemia type II".The FEBS Journal.273 (9):1920–1929.doi:10.1111/j.1742-4658.2006.05202.x.PMID 16640556.
  10. ^Hardwick LJ, Philpott A (July 2019). "Analysis of Chromatin Binding of Ectopically Expressed Proteins in Early Xenopus Embryos".Cold Spring Harbor Protocols.2019 (7) pdb.prot105577.doi:10.1101/pdb.prot105577.PMID 31138717.
  11. ^abcdeHargrove JL, Scoble HA, Mathews WR, Baumstark BR, Biemann K (January 1989)."The structure of tyrosine aminotransferase. Evidence for domains involved in catalysis and enzyme turnover".The Journal of Biological Chemistry.264 (1):45–53.doi:10.1016/S0021-9258(17)31222-X.PMID 2562840.
  12. ^Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, et al. (October 2004). "UCSF Chimera--a visualization system for exploratory research and analysis".Journal of Computational Chemistry.25 (13):1605–1612.Bibcode:2004JCoCh..25.1605P.CiteSeerX 10.1.1.456.9442.doi:10.1002/jcc.20084.PMID 15264254.S2CID 8747218.
  13. ^Comerford KB, Artiss JD, Jen KL, Karakas SE (June 2011). "The beneficial effects of α-cyclodextrin on blood lipids and weight loss in healthy humans".Obesity.19 (6). Silver Spring, Md.:1200–4.doi:10.1038/oby.2010.280.PMID 21127475.
  14. ^Scott CR (May 2006). "The genetic tyrosinemias".American Journal of Medical Genetics. Part C, Seminars in Medical Genetics.142C (2):121–126.doi:10.1002/ajmg.c.30092.PMID 16602095.
  15. ^abNatt E, Kida K, Odievre M, Di Rocco M, Scherer G (October 1992)."Point mutations in the tyrosine aminotransferase gene in tyrosinemia type II".Proceedings of the National Academy of Sciences of the United States of America.89 (19):9297–9301.Bibcode:1992PNAS...89.9297N.doi:10.1073/pnas.89.19.9297.PMC 50113.PMID 1357662.
  16. ^al-Hemidan AI, al-Hazzaa SA (March 1995). "Richner-Hanhart syndrome (tyrosinemia type II). Case report and literature review".Ophthalmic Genetics.16 (1):21–26.doi:10.3109/13816819509057850.PMID 7648039.
  17. ^abMinami-Hori M, Ishida-Yamamoto A, Katoh N, Takahashi H, Iizuka H (January 2006). "Richner-Hanhart syndrome: report of a case with a novel mutation of tyrosine aminotransferase".Journal of Dermatological Science.41 (1):82–84.doi:10.1016/j.jdermsci.2005.10.007.PMID 16318910.

External links

[edit]
Essential amino acids are in Capitals
Kacetyl-CoA
LYSINE
LEUCINE
TRYPTOPHAN
PHENYLALANINEtyrosine
  • (see below)
G
G→pyruvate
citrate
glycineserine
alanine
cysteine
threonine
G→glutamate
α-ketoglutarate
HISTIDINE
proline
arginine
alpha-ketoglutarate→TCA
Other
G→propionyl-CoA
succinyl-CoA
VALINE
ISOLEUCINE
METHIONINE
THREONINE
succinyl-CoA→TCA
G→fumarate
PHENYLALANINEtyrosine
G→oxaloacetate
asparagineaspartate
2.6.1:Transaminases
2.6.3: Oximinotransferases
2.6.99: Other
Activity
Regulation
Classification
Kinetics
Types
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