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TAP1

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
TAP1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1JJ7

Identifiers
AliasesTAP1, ABC17, ABCB2, APT1, D6S114E, PSF-1, PSF1, RING4, TAP1*0102N, TAP1N, transporter 1, ATP-binding cassette, sub-family B (MDR/TAP), transporter 1, ATP binding cassette subfamily B member
External IDsOMIM:170260;MGI:98483;HomoloGene:495;GeneCards:TAP1;OMA:TAP1 - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for TAP1
Genomic location for TAP1
Band6p21.32Start32,845,209bp[1]
End32,853,816bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for TAP1
Genomic location for TAP1
Band17 B1|17 17.98 cMStart34,406,527bp[2]
End34,416,199bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • granulocyte

  • appendix

  • lymph node

  • blood

  • spleen

  • monocyte

  • duodenum

  • skin of abdomen

  • skin of leg

  • upper lobe of left lung
Top expressed in
  • mesenteric lymph nodes

  • granulocyte

  • thymus

  • spleen

  • mucous cell of stomach

  • intestinal villus

  • jejunum

  • Ileal epithelium

  • duodenum

  • subcutaneous adipose tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6890

21354

Ensembl
ENSG00000226173
ENSG00000168394
ENSG00000224212
ENSG00000230705
ENSG00000206297

ENSG00000227816
ENSG00000224748
ENSG00000232367

ENSMUSG00000037321

UniProt

Q03518

P21958

RefSeq (mRNA)

NM_001292022
NM_000593

NM_001161730
NM_013683

RefSeq (protein)

NP_000584
NP_001278951

NP_001155202
NP_038711

Location (UCSC)Chr 6: 32.85 – 32.85 MbChr 17: 34.41 – 34.42 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transporter associated with antigen processing 1 (TAP1) is aprotein that in humans is encoded by theTAP1gene. A member of theATP-binding cassette transporter family, it is also known as ABCB2.[5][6]

Function

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The membrane-associated protein encoded by this gene is a member of the superfamily of ATP-binding cassette (ABC) transporters. ABC proteins transport various molecules across extra- and intra-cellular membranes. ABC genes are divided into seven distinct subfamilies (ABC1, MDR/TAP, MRP, ALD, OABP, GCN20, White). This protein is a member of the MDR/TAP subfamily. Members of the MDR/TAP subfamily are involved in multidrug resistance. The protein encoded by this gene is involved in the pumping of degraded cytosolic peptides across theendoplasmic reticulum into the membrane-bound compartment where class I molecules assemble. Mutations in this gene may be associated withankylosing spondylitis,insulin-dependent diabetes mellitus, and celiac disease.[7]

See also

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Interactions

[edit]

TAP1 has been shown tointeract with:

References

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  1. ^abcENSG00000168394, ENSG00000224212, ENSG00000230705, ENSG00000206297, ENSG00000227816, ENSG00000224748, ENSG00000232367 GRCh38: Ensembl release 89: ENSG00000226173, ENSG00000168394, ENSG00000224212, ENSG00000230705, ENSG00000206297, ENSG00000227816, ENSG00000224748, ENSG00000232367Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000037321Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Bodmer JG, Marsh SG, Albert ED, Bodmer WF, Dupont B, Erlich HA, Mach B, Mayr WR, Parham P, Sasazuki T (Oct 1992)."Nomenclature for factors of the HLA system, 1991. WHO Nomenclature Committee for factors of the HLA system".Tissue Antigens.39 (4):161–173.doi:10.1111/j.1399-0039.1992.tb01932.x.PMID 1529427.
  6. ^Bahram S, Arnold D, Bresnahan M, Strominger JL, Spies T (Dec 1991)."Two putative subunits of a peptide pump encoded in the human major histocompatibility complex class II region".Proc Natl Acad Sci U S A.88 (22):10094–10098.Bibcode:1991PNAS...8810094B.doi:10.1073/pnas.88.22.10094.PMC 52874.PMID 1946428.
  7. ^"Entrez Gene: TAP1 transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)".
  8. ^abPaulsson KM, Kleijmeer MJ, Griffith J, Jevon M, Chen S, Anderson PO, Sjogren HO, Li S, Wang P (May 2002)."Association of tapasin and COPI provides a mechanism for the retrograde transport of major histocompatibility complex (MHC) class I molecules from the Golgi complex to the endoplasmic reticulum".J. Biol. Chem.277 (21):18266–18271.doi:10.1074/jbc.M201388200.PMID 11884415.
  9. ^Raghuraman G, Lapinski PE, Raghavan M (Nov 2002)."Tapasin interacts with the membrane-spanning domains of both TAP subunits and enhances the structural stability of TAP1 x TAP2 Complexes".J. Biol. Chem.277 (44):41786–41794.doi:10.1074/jbc.M207128200.PMID 12213826.

Further reading

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External links

[edit]
PDB gallery
  • 1jj7: Crystal Structure of the C-terminal ATPase domain of human TAP1
    1jj7: Crystal Structure of the C-terminal ATPase domain of human TAP1
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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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