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Serum response factor

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens
SRF
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1HBX,1K6O,1SRS

Identifiers
AliasesSRF, MCM1, serum response factor
External IDsOMIM:600589;MGI:106658;HomoloGene:31135;GeneCards:SRF;OMA:SRF - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for SRF
Genomic location for SRF
Band6p21.1Start43,171,269bp[1]
End43,181,506bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for SRF
Genomic location for SRF
Band17|17 CStart46,859,255bp[2]
End46,867,101bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • muscle layer of sigmoid colon

  • left uterine tube

  • popliteal artery

  • tibial arteries

  • right coronary artery

  • saphenous vein

  • body of uterus

  • right auricle of heart

  • gastric mucosa

  • thoracic aorta
Top expressed in
  • tail of embryo

  • genital tubercle

  • zygote

  • muscle of thigh

  • lip

  • superior frontal gyrus

  • granulocyte

  • primary visual cortex

  • dentate gyrus of hippocampal formation granule cell

  • skeletal muscle tissue
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6722

20807

Ensembl

ENSG00000112658

ENSMUSG00000015605

UniProt

P11831

Q9JM73

RefSeq (mRNA)

NM_003131
NM_001292001

NM_020493

RefSeq (protein)

NP_001278930
NP_003122
NP_003122.1

NP_065239

Location (UCSC)Chr 6: 43.17 – 43.18 MbChr 17: 46.86 – 46.87 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Serum response factor, also known asSRF, is atranscription factor protein.[5]

Function

[edit]

Serum response factor is a member of theMADS (MCM1,Agamous,Deficiens, andSRF) box superfamily of transcription factors.[6] This protein binds to the serumresponse element (SRE) in thepromoter region of target genes. This protein regulates the activity of manyimmediate early genes, for examplec-fos, and thereby participates incell cycle regulation,apoptosis, cell growth, andcell differentiation. This gene is the downstream target of many pathways; for example, themitogen-activated protein kinase pathway (MAPK) that acts through the ternary complex factors (TCFs).[7][8]

SRF is important during the development of the embryo, as it has been linked to the formation ofmesoderm.[9][10] In the fully developed mammal, SRF is crucial for the growth ofskeletal muscle.[11] Interaction of SRF with other proteins, such assteroid hormone receptors, may contribute to regulation of muscle growth bysteroids.[12] Interaction of SRF with other proteins such asmyocardin orElk-1 may enhance or suppress expression of genes important for growth ofvascular smooth muscle.

Clinical significance

[edit]

Lack of skin SRF is associated withpsoriasis and other skin diseases.[13]

Interactions

[edit]

Serum response factor has been shown tointeract with:

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000112658Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000015605Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Norman C, Runswick M, Pollock R, Treisman R (December 1988). "Isolation and properties of cDNA clones encoding SRF, a transcription factor that binds to the c-fos serum response element".Cell.55 (6):989–1003.doi:10.1016/0092-8674(88)90244-9.PMID 3203386.S2CID 20004673.
  6. ^Shore P, Sharrocks AD (April 1995). "The MADS-box family of transcription factors".Eur. J. Biochem.229 (1):1–13.doi:10.1111/j.1432-1033.1995.0001l.x.PMID 7744019.
  7. ^Dalton S, Marais R, Wynne J, Treisman R (June 1993). "Isolation and characterization of SRF accessory proteins".Philos. Trans. R. Soc. Lond. B Biol. Sci.340 (1293):325–32.Bibcode:1993RSPTB.340..325D.doi:10.1098/rstb.1993.0074.PMID 8103935.
  8. ^"SRF serum response factor".Entrez Gene. National Center for Biotechnology Information, National Institutes of Health.
  9. ^Sepulveda JL, Vlahopoulos S, Iyer D, Belaguli N, Schwartz RJ (July 2002)."Combinatorial expression of GATA4, Nkx2-5, and serum response factor directs early cardiac gene activity".J. Biol. Chem.277 (28):25775–82.doi:10.1074/jbc.M203122200.PMID 11983708.
  10. ^Barron MR, Belaguli NS, Zhang SX, Trinh M, Iyer D, Merlo X, Lough JW, Parmacek MS, Bruneau BG, Schwartz RJ (March 2005)."Serum response factor, an enriched cardiac mesoderm obligatory factor, is a downstream gene target for Tbx genes".J. Biol. Chem.280 (12):11816–28.doi:10.1074/jbc.M412408200.PMID 15591049.
  11. ^Li S, Czubryt MP, McAnally J, Bassel-Duby R, Richardson JA, Wiebel FF, Nordheim A, Olson EN (January 2005)."Requirement for serum response factor for skeletal muscle growth and maturation revealed by tissue-specific gene deletion in mice".Proc. Natl. Acad. Sci. U.S.A.102 (4):1082–7.Bibcode:2005PNAS..102.1082L.doi:10.1073/pnas.0409103102.PMC 545866.PMID 15647354.
  12. ^Vlahopoulos S, Zimmer WE, Jenster G, Belaguli NS, Balk SP, Brinkmann AO, Lanz RB, Zoumpourlis VC, Schwartz RJ (March 2005)."Recruitment of the androgen receptor via serum response factor facilitates expression of a myogenic gene".J. Biol. Chem.280 (9):7786–92.doi:10.1074/jbc.M413992200.PMID 15623502.
  13. ^Koegel H, von Tobel L, Schäfer M, Alberti S, Kremmer E, Mauch C, Hohl D, Wang XJ, Beer HD, Bloch W, Nordheim A, Werner S (April 2009)."Loss of serum response factor in keratinocytes results in hyperproliferative skin disease in mice".J. Clin. Invest.119 (4):899–910.doi:10.1172/JCI37771.PMC 2662566.PMID 19307725.
  14. ^Jung DJ, Sung HS, Goo YW, Lee HM, Park OK, Jung SY, Lim J, Kim HJ, Lee SK, Kim TS, Lee JW, Lee YC (July 2002)."Novel transcription coactivator complex containing activating signal cointegrator 1".Mol. Cell. Biol.22 (14):5203–11.doi:10.1128/mcb.22.14.5203-5211.2002.PMC 139772.PMID 12077347.
  15. ^abZhu C, Johansen FE, Prywes R (September 1997)."Interaction of ATF6 and serum response factor".Mol. Cell. Biol.17 (9):4957–66.doi:10.1128/MCB.17.9.4957.PMC 232347.PMID 9271374.
  16. ^Hanlon M, Sealy L (May 1999)."Ras regulates the association of serum response factor and CCAAT/enhancer-binding protein beta".J. Biol. Chem.274 (20):14224–8.doi:10.1074/jbc.274.20.14224.PMID 10318842.
  17. ^Sealy L, Malone D, Pawlak M (March 1997)."Regulation of the cfos serum response element by C/EBPbeta".Mol. Cell. Biol.17 (3):1744–55.doi:10.1128/mcb.17.3.1744.PMC 231899.PMID 9032301.
  18. ^abMatsuzaki K, Minami T, Tojo M, Honda Y, Saitoh N, Nagahiro S, Saya H, Nakao M (March 2003)."PML-nuclear bodies are involved in cellular serum response".Genes Cells.8 (3):275–86.doi:10.1046/j.1365-2443.2003.00632.x.PMID 12622724.S2CID 9697837.
  19. ^Hassler M, Richmond TJ (June 2001)."The B-box dominates SAP-1-SRF interactions in the structure of the ternary complex".EMBO J.20 (12):3018–28.doi:10.1093/emboj/20.12.3018.PMC 150215.PMID 11406578.
  20. ^Belaguli NS, Sepulveda JL, Nigam V, Charron F, Nemer M, Schwartz RJ (October 2000)."Cardiac tissue enriched factors serum response factor and GATA-4 are mutual coregulators".Mol. Cell. Biol.20 (20):7550–8.doi:10.1128/mcb.20.20.7550-7558.2000.PMC 86307.PMID 11003651.
  21. ^Morin S, Paradis P, Aries A, Nemer M (February 2001)."Serum response factor-GATA ternary complex required for nuclear signaling by a G-protein-coupled receptor".Mol. Cell. Biol.21 (4):1036–44.doi:10.1128/MCB.21.4.1036-1044.2001.PMC 99558.PMID 11158291.
  22. ^Joliot V, Demma M, Prywes R (February 1995). "Interaction with RAP74 subunit of TFIIF is required for transcriptional activation by serum response factor".Nature.373 (6515):632–5.Bibcode:1995Natur.373..632J.doi:10.1038/373632a0.PMID 7854423.S2CID 47196160.
  23. ^Zhu H, Joliot V, Prywes R (February 1994)."Role of transcription factor TFIIF in serum response factor-activated transcription".J. Biol. Chem.269 (5):3489–97.doi:10.1016/S0021-9258(17)41889-8.PMID 8106390.
  24. ^Grueneberg DA, Henry RW, Brauer A, Novina CD, Cheriyath V, Roy AL, Gilman M (October 1997)."A multifunctional DNA-binding protein that promotes the formation of serum response factor/homeodomain complexes: identity to TFII-I".Genes Dev.11 (19):2482–93.doi:10.1101/gad.11.19.2482.PMC 316568.PMID 9334314.
  25. ^Kim DW, Cheriyath V, Roy AL, Cochran BH (June 1998)."TFII-I enhances activation of the c-fos promoter through interactions with upstream elements".Mol. Cell. Biol.18 (6):3310–20.doi:10.1128/mcb.18.6.3310.PMC 108912.PMID 9584171.
  26. ^Groisman R, Masutani H, Leibovitch MP, Robin P, Soudant I, Trouche D, Harel-Bellan A (March 1996)."Physical interaction between the mitogen-responsive serum response factor and myogenic basic-helix-loop-helix proteins".J. Biol. Chem.271 (9):5258–64.doi:10.1074/jbc.271.9.5258.PMID 8617811.
  27. ^Biesiada E, Hamamori Y, Kedes L, Sartorelli V (April 1999)."Myogenic basic helix-loop-helix proteins and Sp1 interact as components of a multiprotein transcriptional complex required for activity of the human cardiac alpha-actin promoter".Mol. Cell. Biol.19 (4):2577–84.doi:10.1128/MCB.19.4.2577.PMC 84050.PMID 10082523.
  28. ^Yamada K, Osawa H, Granner DK (October 1999)."Identification of proteins that interact with NF-YA".FEBS Lett.460 (1):41–5.Bibcode:1999FEBSL.460...41Y.doi:10.1016/s0014-5793(99)01311-3.PMID 10571058.S2CID 28576187.
  29. ^Lee SK, Kim JH, Lee YC, Cheong J, Lee JW (April 2000)."Silencing mediator of retinoic acid and thyroid hormone receptors, as a novel transcriptional corepressor molecule of activating protein-1, nuclear factor-kappaB, and serum response factor".J. Biol. Chem.275 (17):12470–4.doi:10.1074/jbc.275.17.12470.PMID 10777532.
  30. ^Kim HJ, Kim JH, Lee JW (October 1998)."Steroid receptor coactivator-1 interacts with serum response factor and coactivates serum response element-mediated transactivations".J. Biol. Chem.273 (44):28564–7.doi:10.1074/jbc.273.44.28564.PMID 9786846.
  31. ^Gupta M, Kogut P, Davis FJ, Belaguli NS, Schwartz RJ, Gupta MP (March 2001)."Physical interaction between the MADS box of serum response factor and the TEA/ATTS DNA-binding domain of transcription enhancer factor-1".J. Biol. Chem.276 (13):10413–22.doi:10.1074/jbc.M008625200.PMID 11136726.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine ([1]), which is in thepublic domain.

PDB gallery
  • 1hbx: TERNARY COMPLEX OF SAP-1 AND SRF WITH SPECIFIC SRE DNA
    1hbx: TERNARY COMPLEX OF SAP-1 AND SRF WITH SPECIFIC SRE DNA
  • 1k6o: Crystal Structure of a Ternary SAP-1/SRF/c-fos SRE DNA Complex
    1k6o: Crystal Structure of a Ternary SAP-1/SRF/c-fos SRE DNA Complex
  • 1srs: SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA
    1srs: SERUM RESPONSE FACTOR (SRF) CORE COMPLEXED WITH SPECIFIC SRE DNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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