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SOX18

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SOX18
Identifiers
AliasesSOX18, HLTS, HLTRS, SRY-box 18, SRY-box transcription factor 18
External IDsOMIM:601618;MGI:103559;HomoloGene:7546;GeneCards:SOX18;OMA:SOX18 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for SOX18
Genomic location for SOX18
Band20q13.33Start64,047,582bp[1]
End64,049,639bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for SOX18
Genomic location for SOX18
Band2 H4|2 103.71 cMStart181,311,629bp[2]
End181,313,433bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • apex of heart

  • right lung

  • left uterine tube

  • right auricle of heart

  • right lobe of thyroid gland

  • left ventricle

  • right coronary artery

  • gastric mucosa

  • body of uterus

  • left coronary artery
Top expressed in
  • interventricular septum

  • glomerular capillary

  • right lung

  • endothelial cell of lymphatic vessel

  • left lung

  • right lung lobe

  • external carotid artery

  • left lung lobe

  • lactiferous gland

  • internal carotid artery
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

54345

20672

Ensembl

ENSG00000203883

ENSMUSG00000046470

UniProt

P35713

P43680

RefSeq (mRNA)

NM_018419

NM_009236

RefSeq (protein)

NP_060889

NP_033262

Location (UCSC)Chr 20: 64.05 – 64.05 MbChr 2: 181.31 – 181.31 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Transcription factor SOX-18 is aprotein that in humans is encoded by theSOX18gene.[5][6]

Function

[edit]

This gene encodes a member of the SOX (SRY-related HMG-box) family of transcription factors involved in the regulation of embryonic development and in the determination of the cell fate. The encoded protein may act as a transcriptional regulator after forming a protein complex with other proteins. This protein plays a role in hair, blood vessel, and lymphatic vessel development. Mutations in this gene have been associated with recessive and dominant forms ofhypotrichosis-lymphedema-telangiectasia (HLTS).[7][6] An autosomal truncating dominant mutation in this gene has also been associated with renal failure in the conditionhypotrichosis-lymphedema-telangiectasia-renal defect syndrome (HLTRS).[8][9]

Interactions

[edit]

SOX18 has been shown tointeract with:

MEF2C[10]

RBPJ[11]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000203883Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000046470Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Azuma T, Seki N, Yoshikawa T, Saito T, Masuho Y, Muramatsu M (July 2000)."cDNA cloning, tissue expression, and chromosome mapping of human homolog of SOX18".Journal of Human Genetics.45 (3):192–5.doi:10.1007/s100380050210.PMID 10807548.
  6. ^ab"Entrez Gene: SO X18 SRY (sex determining region Y)-box 18".
  7. ^Valenzuela I, Fernández-Alvarez P, Plaja A, Ariceta G, Sabaté-Rotés A, García-Arumí E, Vendrell T, Tizzano E (May 2018). "Further delineation of the SOX18-related Hypotrichosis, Lymphedema, Telangiectasia syndrome (HTLS)".European Journal of Medical Genetics.61 (5):269–272.doi:10.1016/j.ejmg.2018.01.001.PMID 29307792.
  8. ^Moalem S, Brouillard P, Kuypers D, Legius E, Harvey E, Taylor G, Francois M, Vikkula M, Chitayat D (April 2015). "Hypotrichosis-lymphedema-telangiectasia-renal defect associated with a truncating mutation in the SOX18 gene".Clinical Genetics.87 (4):378–82.doi:10.1111/cge.12388.PMID 24697860.S2CID 32417398.
  9. ^"Hypotrichosis-Lymphedema-Telangiectasia-Renal Defect Syndrome". The University of Arizona Health Sciences.
  10. ^Hosking BM, Wang SC, Chen SL, Penning S, Koopman P, Muscat GE (September 2001). "SOX18 directly interacts with MEF2C in endothelial cells".Biochemical and Biophysical Research Communications.287 (2):493–500.Bibcode:2001BBRC..287..493H.doi:10.1006/bbrc.2001.5589.PMID 11554755.
  11. ^Overman J, Fontaine F, Wylie-Sears J, Moustaqil M, Huang L, Meurer M, et al. (July 2019)."R-propranolol is a small molecule inhibitor of the SOX18 transcription factor in a rare vascular syndrome and hemangioma".eLife.8 e43026.doi:10.7554/eLife.43026.PMC 6667216.PMID 31358114.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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