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SMARCAL1

From Wikipedia, the free encyclopedia
Protein-coding gene in humans
SMARCAL1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4MQV

Identifiers
AliasesSMARCAL1, HARP, HHARP, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1
External IDsOMIM:606622;MGI:1859183;HomoloGene:8558;GeneCards:SMARCAL1;OMA:SMARCAL1 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for SMARCAL1
Genomic location for SMARCAL1
Band2q35Start216,412,414bp[1]
End216,483,053bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for SMARCAL1
Genomic location for SMARCAL1
Band1 C3|1 36.72 cMStart72,622,410bp[2]
End72,672,293bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gonad

  • stromal cell of endometrium

  • sural nerve

  • ventricular zone

  • granulocyte

  • ganglionic eminence

  • testicle

  • right adrenal cortex

  • apex of heart

  • islet of Langerhans
Top expressed in
  • primary oocyte

  • zygote

  • genital tubercle

  • secondary oocyte

  • tail of embryo

  • neural layer of retina

  • superior frontal gyrus

  • otic vesicle

  • dentate gyrus of hippocampal formation granule cell

  • ventricular zone
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

50485

54380

Ensembl

ENSG00000138375

ENSMUSG00000039354

UniProt

Q9NZC9

Q8BJL0

RefSeq (mRNA)

NM_001127207
NM_014140

NM_018817

RefSeq (protein)

NP_001120679
NP_054859

NP_061287

Location (UCSC)Chr 2: 216.41 – 216.48 MbChr 1: 72.62 – 72.67 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 is aprotein that in humans is encoded by theSMARCAL1gene.[5][6][7]

Function

[edit]

The protein encoded by this gene is a member of the SWI/SNF family of proteins. Members of this family havehelicase andATPase activities and are thought to regulate transcription of certain genes by altering the chromatin structure around those genes. The SMARCAL1 protein convertRPA-bound, single stranded DNA into double-stranded DNA, an enzyme activity termed "annealing helicase".[8] This activity is important for two cellular functions: replication fork reversal,[9] andR-loop unwinding.[10]

The encoded protein shows sequence similarity to theE. coliRNA polymerase-binding protein HepA. Mutations in this gene are a cause of Schimke immunoosseous dysplasia (SIOD), an autosomal recessive disorder with the diagnostic features ofspondyloepiphyseal dysplasia, renal dysfunction, and T-cell immunodeficiency.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000138375Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000039354Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Muthuswami R, Truman PA, Mesner LD, Hockensmith JW (Mar 2000)."A eukaryotic SWI2/SNF2 domain, an exquisite detector of double-stranded to single-stranded DNA transition elements".The Journal of Biological Chemistry.275 (11):7648–55.doi:10.1074/jbc.275.11.7648.PMID 10713074.
  6. ^Coleman MA, Eisen JA, Mohrenweiser HW (May 2000). "Cloning and characterization of HARP/SMARCAL1: a prokaryotic HepA-related SNF2 helicase protein from human and mouse".Genomics.65 (3):274–82.CiteSeerX 10.1.1.186.4879.doi:10.1006/geno.2000.6174.PMID 10857751.
  7. ^ab"Entrez Gene: SMARCAL1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a-like 1".
  8. ^Yusufzai T, Kadonaga JT (Oct 2008)."HARP is an ATP-driven annealing helicase".Science.322 (5902):748–50.Bibcode:2008Sci...322..748Y.doi:10.1126/science.1161233.PMC 2587503.PMID 18974355.
  9. ^Bétous, Rémy; Mason, Aaron C.; Rambo, Robert P.; Bansbach, Carol E.; Badu-Nkansah, Akosua; Sirbu, Bianca M.; Eichman, Brandt F.; Cortez, David (2012-01-15)."SMARCAL1 catalyzes fork regression and Holliday junction migration to maintain genome stability during DNA replication".Genes & Development.26 (2):151–162.doi:10.1101/gad.178459.111.ISSN 0890-9369.PMC 3273839.PMID 22279047.
  10. ^Hodson, Charlotte; van Twest, Sylvie; Dylewska, Malgorzata; O’Rourke, Julienne J.; Tan, Winnie; Murphy, Vincent J.; Walia, Mannu; Abbouche, Lara; Nieminuszczy, Jadwiga; Dunn, Elyse; Bythell-Douglas, Rohan; Heierhorst, Jörg; Niedzwiedz, Wojciech; Deans, Andrew J. (2022)."Branchpoint translocation by fork remodelers as a general mechanism of R-loop removal".Cell Reports.41 (10): 111749.doi:10.1016/j.celrep.2022.111749.

Further reading

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External links

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