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SLC22A5

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
SLC22A5
Identifiers
AliasesSLC22A5, CDSP, OCTN2, solute carrier family 22 member 5
External IDsOMIM:603377;MGI:1329012;HomoloGene:68295;GeneCards:SLC22A5;OMA:SLC22A5 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)[1]
Chromosome 5 (human)
Genomic location for SLC22A5
Genomic location for SLC22A5
Band5q31.1Start132,369,710bp[1]
End132,395,613bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for SLC22A5
Genomic location for SLC22A5
Band11 B1.3|11 32.02 cMStart53,755,368bp[2]
End53,782,486bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • gastrocnemius muscle

  • mucosa of transverse colon

  • mucosa of ileum

  • jejunal mucosa

  • muscle of thigh

  • right uterine tube

  • human kidney

  • right hemisphere of cerebellum

  • apex of heart

  • tibialis anterior muscle
Top expressed in
  • right kidney

  • human kidney

  • proximal tubule

  • duodenum

  • decidua

  • spermatocyte

  • choroid plexus of fourth ventricle

  • muscle of thigh

  • spermatid

  • blastocyst
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6584

20520

Ensembl

ENSG00000197375

ENSMUSG00000018900

UniProt

O76082

Q9Z0E8

RefSeq (mRNA)

NM_001308122
NM_003060

NM_011396
NM_001362711
NM_001362712

RefSeq (protein)

NP_001295051
NP_003051

NP_035526
NP_001349640
NP_001349641

Location (UCSC)Chr 5: 132.37 – 132.4 MbChr 11: 53.76 – 53.78 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

SLC22A5 is amembrane transport protein associated withprimary carnitine deficiency. This protein is involved in the active cellular uptake ofcarnitine. It acts asymporter, moving sodiumions and other organiccations across the membrane along with carnitine. Such polyspecificorganic cation transporters in the liver, kidney, intestine, and other organs are critical for the elimination of many endogenous small organic cations as well as a wide array of drugs and environmental toxins.[5] Mutations in theSLC22A5 gene causesystemic primary carnitine deficiency, which can lead toheart failure.[6]

Structure

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TheSLC22A5 gene, containing 10 exons,[7] is located on the q arm ofchromosome 5 in position 31.1 and spans 25,910 base pair.[5] The gene produces a 63 kDa protein composed of 557amino acids.[8][9] The protein has 12 putativetransmembrane domains, with a long extracellular loop of 107 amino acids between the first two transmembrane domains and an intracellular loop between the fourth and fifth transmembrane domains. This long extracellular loop has three potential sites forN-glycosylation, and the intracellular loop has anATP/GTP binding motif. In putative intracellular domains, there are five potential sites forprotein-kinase C-dependent phosphorylation and one forprotein-kinase A-dependent phosphorylation.[10]

Function

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TheSLC22A5 gene codes for a plasmaintegral membrane protein which functions as both anorganic cation transporter and a sodium-dependent high affinitycarnitine transporter.[5] The encoded protein is involved in the active cellular uptake of carnitine, transporting onesodium ion with one molecule of carnitine. Organic cations transported by this protein includetetraethylammonium (TEA) without involvement of sodium. The relative uptake activity ratio of carnitine to TEA is 11.3.[11]

Clinical Significance

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The mainphenotypical effect of autosomal recessive mutations, eithercompound heterozygous orhomozygous,[6] in theSLC22A5 gene issystemic primary carnitine deficiency,[7] characterized by impaired carnitine transport, urinary carnitine wasting, low serum carnitine levels, reduced intracellular carnitine accumulation, impairedbeta oxidation, andcytosolicfatty acid accumulation.[6] Patients often display metabolic decompensation,hypoketotic hypoglycemia,hepatic encephalopathy,Reye syndrome, andsudden infant death in their first year, followed by the later onset ofcardiomyopathy orskeletalmyopathy,arrhythmias, muscle weakness, and heart failure in early childhood.[6][12][13] Patients may beasymptomatic, with about 70% of asymptomatic patients having amissense mutation orin-frame deletion;nonsense mutation frequency is increased in symptomatic patients.[14] The symptoms and outcome of the disease can be drastically improved by replacement therapy with L-carnitine.[15] The estimated incidence of primary carnitine deficiency in newborns is about 1 in 40,000.[16]

Interactions

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SLC22A5interacts withPDZK1.[11]

See also

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References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000197375Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000018900Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abc"Entrez Gene: SLC22A5 solute carrier family 22 (organic cation transporter), member 5". Retrieved2018-07-25.
  6. ^abcdLahrouchi N, Lodder EM, Mansouri M, Tadros R, Zniber L, Adadi N, Clur SB, van Spaendonck-Zwarts KY, Postma AV, Sefiani A, Ratbi I, Bezzina CR (June 2017)."Exome sequencing identifies primary carnitine deficiency in a family with cardiomyopathy and sudden death".European Journal of Human Genetics.25 (6):783–787.doi:10.1038/ejhg.2017.22.PMC 5477358.PMID 28295041.
  7. ^abOnline Mendelian Inheritance in Man, OMIM®. Johns Hopkins University, Baltimore, MD. MIM Number: {603377}: {04/29/2015}: . World Wide Web URL:https://omim.org/
  8. ^Zong NC, Li H, Li H, Lam MP, Jimenez RC, Kim CS, Deng N, Kim AK, Choi JH, Zelaya I, Liem D, Meyer D, Odeberg J, Fang C, Lu HJ, Xu T, Weiss J, Duan H, Uhlen M, Yates JR, Apweiler R, Ge J, Hermjakob H, Ping P (October 2013)."Integration of cardiac proteome biology and medicine by a specialized knowledgebase".Circulation Research.113 (9):1043–53.doi:10.1161/CIRCRESAHA.113.301151.PMC 4076475.PMID 23965338.
  9. ^"SLC22A5 - Solute carrier family 22 member 5".Cardiac Organellar Protein Atlas Knowledgebase (COPaKB). Archived fromthe original on 2018-07-26. Retrieved2018-07-25.
  10. ^Wu X, Prasad PD, Leibach FH, Ganapathy V (May 1998). "cDNA sequence, transport function, and genomic organization of human OCTN2, a new member of the organic cation transporter family".Biochemical and Biophysical Research Communications.246 (3):589–95.doi:10.1006/bbrc.1998.8669.PMID 9618255.
  11. ^ab"SLC22A5 - Solute carrier family 22 member 5 - Homo sapiens (Human) - SLC22A5 gene & protein".www.uniprot.org. Retrieved2018-07-25.
  12. ^Yilmaz TF, Atay M, Toprak H, Guler S, Aralasmak A, Alkan A (2014-03-10). "MRI findings in encephalopathy with primary carnitine deficiency: a case report".Journal of Neuroimaging.25 (2):325–328.doi:10.1111/jon.12102.PMID 24612242.S2CID 35640542.
  13. ^Mazzini M, Tadros T, Siwik D, Joseph L, Bristow M, Qin F, Cohen R, Monahan K, Klein M, Colucci W (2011). "Primary carnitine deficiency and sudden death: in vivo evidence of myocardial lipid peroxidation and sulfonylation of sarcoendoplasmic reticulum calcium ATPase 2".Cardiology.120 (1):52–8.doi:10.1159/000333127.PMID 22116472.S2CID 207687571.
  14. ^Yoon YA, Lee DH, Ki CS, Lee SY, Kim JW, Lee YW, Park HD (2012). "SLC22A5 mutations in a patient with systemic primary carnitine deficiency: the first Korean case confirmed by biochemical and molecular investigation".Annals of Clinical and Laboratory Science.42 (4):424–8.PMID 23090741.
  15. ^Agnetti A, Bitton L, Tchana B, Raymond A, Carano N (January 2013). "Primary carnitine deficiency dilated cardiomyopathy: 28 years follow-up".International Journal of Cardiology.162 (2): e34–5.doi:10.1016/j.ijcard.2012.05.038.PMID 22658351.
  16. ^Koizumi A, Nozaki J, Ohura T, Kayo T, Wada Y, Nezu J, Ohashi R, Tamai I, Shoji Y, Takada G, Kibira S, Matsuishi T, Tsuji A (November 1999)."Genetic epidemiology of the carnitine transporter OCTN2 gene in a Japanese population and phenotypic characterization in Japanese pedigrees with primary systemic carnitine deficiency".Human Molecular Genetics.8 (12):2247–54.doi:10.1093/hmg/8.12.2247.PMID 10545605.

Further reading

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External links

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

By group
SLC1–10
(1):
(2):
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SLC11–20
(11):
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SLC21–30
(21):
(22):
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SLC31–40
(31):
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SLC41–48
(41):
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(48):
SLCO1–4
Symporter,Cotransporter
Antiporter (exchanger)
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