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SLC13A5

From Wikipedia, the free encyclopedia
Protein-coding gene in humans

SLC13A5
Identifiers
AliasesSLC13A5, EIEE25, NACT, mIndy, solute carrier family 13 member 5, INDY, DEE25
External IDsOMIM:608305;MGI:3037150;HomoloGene:21941;GeneCards:SLC13A5;OMA:SLC13A5 - orthologs
Gene location (Human)
Chromosome 17 (human)
Chr.Chromosome 17 (human)[1]
Chromosome 17 (human)
Genomic location for SLC13A5
Genomic location for SLC13A5
Band17p13.1Start6,684,719bp[1]
End6,713,377bp[1]
Gene location (Mouse)
Chromosome 11 (mouse)
Chr.Chromosome 11 (mouse)[2]
Chromosome 11 (mouse)
Genomic location for SLC13A5
Genomic location for SLC13A5
Band11|11 B4Start72,132,815bp[2]
End72,158,048bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • parotid gland

  • tibia

  • nucleus accumbens

  • gonad

  • right frontal lobe

  • caudate nucleus

  • cingulate gyrus

  • anterior cingulate cortex

  • Brodmann area 9
Top expressed in
  • calvaria

  • molar

  • spermatocyte

  • body of femur

  • spermatid

  • seminiferous tubule

  • stria vascularis

  • fossa

  • lumbar subsegment of spinal cord

  • embryo
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

284111

237831

Ensembl

ENSG00000141485

ENSMUSG00000020805

UniProt

Q86YT5

Q67BT3

RefSeq (mRNA)

NM_001143838
NM_001284509
NM_001284510
NM_177550

NM_001004148
NM_001372402
NM_001372403

RefSeq (protein)

NP_001137310
NP_001271438
NP_001271439
NP_808218

NP_001004148
NP_001359331
NP_001359332

Location (UCSC)Chr 17: 6.68 – 6.71 MbChr 11: 72.13 – 72.16 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Solute carrier family 13 (sodium-dependent citrate transporter), member 5 also known as theNa+/citrate cotransporter ormIndy is aprotein that in humans is encoded by the SLC13A5gene.[5] It is the mammalian homolog of the flyIndy gene.

Function

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SLC13A5 is atricarboxylate plasma transporter with a preference forcitrate.[5]

Clinical significance

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In 2014, by means ofexome sequencing it was determined that a genetic mutation of the gene is the cause of a rareSLC13A5 Epilepsy.[6] Mutations in SLC13A5 causeautosomal recessive epileptic encephalopathy with seizure onset in the first days of life.[6] Those afflicted suffer from seizures, global developmental delay, movement disorder and hypotonia.

Reduced expression of homologous genes is associated with longer lifespan inDrosophila melanogaster andCaenorhabditis elegans,[7][8] and obesity protection inlaboratory mice.[9] Increased expression is associated with type 2 diabetes and non-alcoholic fatty liver disease. A sugary diet upregulates the expression of the gene, and so doesInterleukin 6 signaling.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000141485Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020805Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: Solute carrier family 13 (sodium-dependent citrate transporter), member 5".
  6. ^abThevenon J, Milh M, Feillet F, St-Onge J, Duffourd Y, Jugé C, et al. (July 2014)."Mutations in SLC13A5 cause autosomal-recessive epileptic encephalopathy with seizure onset in the first days of life".American Journal of Human Genetics.95 (1):113–120.doi:10.1016/j.ajhg.2014.06.006.PMC 4085634.PMID 24995870.
  7. ^Rogina B, Reenan RA, Nilsen SP, Helfand SL (December 2000). "Extended life-span conferred by cotransporter gene mutations in Drosophila".Science.290 (5499):2137–2140.Bibcode:2000Sci...290.2137R.doi:10.1126/science.290.5499.2137.PMID 11118146.
  8. ^Fei YJ, Liu JC, Inoue K, Zhuang L, Miyake K, Miyauchi S, et al. (April 2004)."Relevance of NAC-2, an Na+-coupled citrate transporter, to life span, body size and fat content in Caenorhabditis elegans".The Biochemical Journal.379 (Pt 1):191–198.doi:10.1042/bj20031807.PMC 1224044.PMID 14678010.
  9. ^Birkenfeld AL, Lee HY, Guebre-Egziabher F, Alves TC, Jurczak MJ, Jornayvaz FR, et al. (August 2011)."Deletion of the mammalian INDY homolog mimics aspects of dietary restriction and protects against adiposity and insulin resistance in mice".Cell Metabolism.14 (2):184–195.doi:10.1016/j.cmet.2011.06.009.PMC 3163140.PMID 21803289.
  10. ^von Loeffelholz C, Lieske S, Neuschäfer-Rube F, Willmes DM, Raschzok N, Sauer IM, et al. (August 2017)."The human longevity gene homolog INDY and interleukin-6 interact in hepatic lipid metabolism".Hepatology.66 (2):616–630.doi:10.1002/hep.29089.PMC 5519435.PMID 28133767.

Further reading

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External links

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By group
SLC1–10
(1):
(2):
(3):
(4):
(5):
(6):
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SLC11–20
(11):
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(17):
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SLC21–30
(21):
(22):
(23):
(24):
(25):
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SLC31–40
(31):
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(33):
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SLC41–48
(41):
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(48):
SLCO1–4
Symporter,Cotransporter
Antiporter (exchanger)

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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