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SLAMF1

From Wikipedia, the free encyclopedia

Protein-coding gene in humans
This articleneeds additional or more specificcategories. Pleasehelp out byadding categories to it so that it can be listed with similar articles.(January 2025)
SLAMF1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1M27,1KA7,1I3Z,1D4T,1D4W,1KA6

Identifiers
AliasesSLAMF1, CD150, CDw150, SLAM, signaling lymphocytic activation molecule family member 1
External IDsOMIM:603492;MGI:1351314;HomoloGene:48162;GeneCards:SLAMF1;OMA:SLAMF1 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for SLAMF1
Genomic location for SLAMF1
Band1q23.3Start160,608,106bp[1]
End160,647,044bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for SLAMF1
Genomic location for SLAMF1
Band1 H3|1 79.54 cMStart171,594,695bp[2]
End171,628,752bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • thymus

  • lymph node

  • granulocyte

  • appendix

  • blood

  • tonsil

  • bone marrow cell

  • spleen

  • rectum

  • pancreatic ductal cell
Top expressed in
  • blood

  • thymus

  • zygote

  • secondary oocyte

  • primary oocyte

  • tibiofemoral joint

  • spleen

  • mesenteric lymph nodes

  • embryo

  • embryo
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6504

27218

Ensembl

ENSG00000117090

ENSMUSG00000015316

UniProt

Q13291

Q9QUM4

RefSeq (mRNA)

NM_003037
NM_001330754

NM_013730
NM_001360898

RefSeq (protein)

NP_001317683
NP_003028

NP_038758
NP_001347827

Location (UCSC)Chr 1: 160.61 – 160.65 MbChr 1: 171.59 – 171.63 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Signaling lymphocytic activation molecule 1 is aprotein that in humans is encoded by theSLAMF1gene.[5][6] Recently SLAMF1 has also been designatedCD150 (cluster of differentiation 150).

SLAMF1 belongs to thesignaling lymphocytic activation molecule family. As otherreceptors from this family, SLAMF1 is expressed in different types ofhematopoietic cells and it plays a role in the regulation of theimmune system.[7]

Gene

[edit]

Thegene encoding SLAMF1receptor is located on the humanchromosome 1. It consists of eightexons and sevenintrons.Alternative splicing of SLAMF1 transcripts results in severalisoforms of theprotein, including the conventional transmembrane isoform (mCD150), secreted isoform (sCD150) cytoplasmic isoform (cCD150), and the novel transmembrane isoform (nCD150).[7]

SLAMF1 is expressed inhematopoietic stem cells. It is also used as one of the markers for their identification.[8] Furthermore, its expression was detected inthymocytes,NKT cells,T cells,B cells,monocytes,macrophages anddendritic cells.Monocytes,macrophages anddendritic cells express SLAMF1 after their activation. The activation ofT cells andplasma cell differentiation leads to the increased expression of thisreceptor.[7][8] The interaction of SLAMF1promoter andenhancers with theEarly B-cell factor 1 (EBF1) is required for the expression of SLAMF1 gene inB cells.STAT6,IRF4, andNF-kB factors involved in the transfer of the signals from theB-cell receptor, its co-receptors andIL-4R, also play important role in the regulation of SLAMF1 expression.[9] The expression of SLAMF1 is not restricted toimmune cells and their progenitors. From non-immune cells,platelets express SLAMF1.[7][8]

Structure

[edit]

SLAMF1 is a type Itransmembrane protein belonging to theimmunoglobulin superfamily.[8] Its molecular weight is between 70 kDa and 95 kDa. The extracellular region of thereceptor is composed of one Ig variable-likedomain and one Ig constant 2-likedomain. The intracellular region of thereceptor contains two intracellular tyrosine-based switch motives (ITSMs) that interact withSH2 domain-containingproteins. However, nCD150 intracellular region differs from otherisoforms of thisprotein, it lacks ITSMs. sCD150 isoform lacks thetransmembrane domain and therefore, it can not be anchored to thecell membrane.[7]

Signaling

[edit]

Thereceptor SLAMF1 mediates homophilic interactions as most of thereceptors from theSLAMF.Signaling from SLAMF1receptor can be activating or inhibitory. The type of the signal depends on thecell type,differentiation stage, and the combination of signals from otherreceptors.[7]

SH2 domain-containingproteins, specificallyadaptor proteinsSAP andEAT-2, andphosphatasesSHP-1,SHP-2 andSHIP, interact with ITSMs in the intracellular region of SLAMF1.[7][10] Binding ofSAP to ITSMs leads to the activation of thekinaseFyn that phosphorylatestyrosines of SLAMF1 and recruits downstreamsignalingproteins. Because of the high affinity ofSAP totyrosine phosphorylated ITSMs, it outcompetes thephosphatases which are the mediators of the inhibitory signal. Therefore, the expression and availability ofSAP play a crucial role in the determination of the type of the signal.[11][12]

Function

[edit]

SLAMF1 is involved in the regulation ofthymocyte development,T cellproliferation,differentiation andT cell function, such as the cytotoxic activity ofCD8+ T cells and the production ofIL-4,IL-13 andIFNγ. InB cells, it regulates theproliferation and theantibody production.[7][8] SLAMF1 acts as a self-ligand during the interaction betweenB cells andT cells and promoteslymphocyte activation.[10]

The development ofNKT cells is dependent on a signal mediated bySAP. It was found out that the homophilic interaction of SLAMF1 or SLAMF6 is required forSAP recruitment inNKT cells. This interaction mediates a secondary signal crucial forNKT celldifferentiation and expansion in thethymus.[13]

SLAMF1 expression inmacrophages is associated with killing ofGram-negative bacteria. SLAMF1 acts as a bacterial sensor. It is internalized after the recognition ofGram-negative bacteria, and it plays a role in the regulation ofphagosome maturation,ROS andNO production. The absence of SLAMF1 inphagocytes leads, among other things, to the disruption ofcytokine production.[13]

Role of SLAMF1 in diseases

[edit]

Viral infections

[edit]

SLAMF1 is areceptor forMorbilliviruses.[7] Thisgenus ofviruses includes agents causingmeasles in humans,rinderpest in cattle anddistemper in dogs and cats.[14] Ig variable-likedomain of SLAMF1 binds tohemagglutinin on the surface of thevirus and this interaction mediates thevirus entry into the hostcell.[7]

Cancer

[edit]

SLAMF1 is expressed incancer cells in some types ofhematologic malignancies (cutaneous T-cell lymphoma, few types ofB-cell non-Hodgkin´s lymphoma,Hodgkin´s lymphoma and about 50 % ofchronic lymphocytic leukemia cases).[7] It regulatescancer cell growth and survival by activatingPI3K/Akt/mTOR signaling pathway. Therefore, SLAMF1 could be used as a diagnostical and prognostic marker in these cancer types.[8] Several cases ofleukemia orHodgkin´s lymphoma remission aftermeasles virus infection orvaccination have been described. Therefore, SLAMF1 could be used as a target for cancer therapy which is based on themeasles virus-mediatedlysis of thecancer cells.[7]

nCD150 isoform was found intumors of the central nervous system, such asglioblastoma, anaplastic and diffuseastrocytoma andependymoma.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000117090Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000015316Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Cocks BG, Chang CC, Carballido JM, Yssel H, de Vries JE, Aversa G (July 1995). "A novel receptor involved in T-cell activation".Nature.376 (6537):260–263.Bibcode:1995Natur.376..260C.doi:10.1038/376260a0.PMID 7617038.S2CID 4319295.
  6. ^"Entrez Gene: SLAMF1 signaling lymphocytic activation molecule family member 1".
  7. ^abcdefghijklGordiienko I, Shlapatska L, Kovalevska L, Sidorenko SP (July 2019)."SLAMF1/CD150 in hematologic malignancies: Silent marker or active player?".Clinical Immunology.204:14–22.doi:10.1016/j.clim.2018.10.015.PMID 30616923.S2CID 58586790.
  8. ^abcdefFarhangnia P, Ghomi SM, Mollazadehghomi S, Nickho H, Akbarpour M, Delbandi AA (2023-05-11)."SLAM-family receptors come of age as a potential molecular target in cancer immunotherapy".Frontiers in Immunology.14 1174138.doi:10.3389/fimmu.2023.1174138.PMC 10213746.PMID 37251372.
  9. ^Schwartz AM, Putlyaeva LV, Covich M, Klepikova AV, Akulich KA, Vorontsov IE, et al. (October 2016). "Early B-cell factor 1 (EBF1) is critical for transcriptional control of SLAMF1 gene in human B cells".Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms.1859 (10):1259–1268.doi:10.1016/j.bbagrm.2016.07.004.PMID 27424222.
  10. ^abcFouquet G, Marcq I, Debuysscher V, Bayry J, Rabbind Singh A, Bengrine A, et al. (March 2018)."Signaling lymphocytic activation molecules Slam and cancers: friends or foes?".Oncotarget.9 (22):16248–16262.doi:10.18632/oncotarget.24575.PMC 5882332.PMID 29662641.
  11. ^Dragovich MA, Mor A (July 2018)."The SLAM family receptors: Potential therapeutic targets for inflammatory and autoimmune diseases".Autoimmunity Reviews.17 (7):674–682.doi:10.1016/j.autrev.2018.01.018.PMC 6508580.PMID 29729453.
  12. ^Wu N, Veillette A (February 2016). "SLAM family receptors in normal immunity and immune pathologies".Current Opinion in Immunology.38:45–51.doi:10.1016/j.coi.2015.11.003.PMID 26682762.
  13. ^abvan Driel BJ, Liao G, Engel P, Terhorst C (2016-01-20)."Responses to Microbial Challenges by SLAMF Receptors".Frontiers in Immunology.7: 4.doi:10.3389/fimmu.2016.00004.PMC 4718992.PMID 26834746.
  14. ^de Vries RD, Duprex WP, de Swart RL (February 2015)."Morbillivirus infections: an introduction".Viruses.7 (2):699–706.doi:10.3390/v7020699.PMC 4353911.PMID 25685949.

Further reading

[edit]

External links

[edit]
  • Overview of all the structural information available in thePDB forUniProt:Q13291 (Signaling lymphocytic activation molecule) at thePDBe-KB.
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