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SCN3B

From Wikipedia, the free encyclopedia

Protein-coding gene in the species Homo sapiens
SCN3B
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4L1D

Identifiers
AliasesSCN3B, ATFB16, BRGDA7, HSA243396, SCNB3, sodium voltage-gated channel beta subunit 3
External IDsOMIM:608214;MGI:1918882;HomoloGene:10176;GeneCards:SCN3B;OMA:SCN3B - orthologs
Gene location (Human)
Chromosome 11 (human)
Chr.Chromosome 11 (human)[1]
Chromosome 11 (human)
Genomic location for SCN3B
Genomic location for SCN3B
Band11q24.1Start123,629,187bp[1]
End123,655,244bp[1]
Gene location (Mouse)
Chromosome 9 (mouse)
Chr.Chromosome 9 (mouse)[2]
Chromosome 9 (mouse)
Genomic location for SCN3B
Genomic location for SCN3B
Band9|9 A5.1Start40,180,513bp[2]
End40,202,914bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • middle temporal gyrus

  • orbitofrontal cortex

  • Brodmann area 46

  • entorhinal cortex

  • superior frontal gyrus

  • Region I of hippocampus proper

  • prefrontal cortex

  • postcentral gyrus

  • dorsolateral prefrontal cortex

  • Brodmann area 23
Top expressed in
  • superior cervical ganglion

  • Region I of hippocampus proper

  • olfactory epithelium

  • dentate gyrus

  • hippocampus proper

  • external carotid artery

  • dentate gyrus of hippocampal formation granule cell

  • nucleus accumbens

  • piriform cortex

  • ventral tegmental area
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

55800

235281

Ensembl

ENSG00000166257

ENSMUSG00000049281

UniProt

Q9NY72

Q8BHK2

RefSeq (mRNA)

NM_001040151
NM_018400

NM_001083917
NM_001286614
NM_153522
NM_178227
NM_001359700

RefSeq (protein)

NP_001035241
NP_060870

NP_001077386
NP_001273543
NP_839941
NP_001346629

Location (UCSC)Chr 11: 123.63 – 123.66 MbChr 9: 40.18 – 40.2 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Sodium channel subunit beta-3 is aprotein that in humans is encoded by theSCN3Bgene.[5][6] Two alternatively spliced variants, encoding the same protein, have been identified.

Function

[edit]

Voltage-gated sodium channels are transmembraneglycoprotein complexes composed of a large alpha subunit and one or more regulatory beta subunits. They are responsible for the generation and propagation ofaction potentials in neurons and muscle. This gene encodes one member of the sodium channel beta subunit gene family, and influences the inactivation kinetics of the sodium channel.[6]

Clinical significance

[edit]

Mutations in the gene are associated with abnormal cardiac electrophysiology.[7][8]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000166257Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000049281Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Morgan K, Stevens EB, Shah B, Cox PJ, Dixon AK, Lee K, Pinnock RD, Hughes J, Richardson PJ, Mizuguchi K, Jackson AP (Apr 2000)."β3: An additional auxiliary subunit of the voltage-sensitive sodium channel that modulates channel gating with distinct kinetics".Proc Natl Acad Sci U S A.97 (5):2308–13.Bibcode:2000PNAS...97.2308M.doi:10.1073/pnas.030362197.PMC 15797.PMID 10688874.
  6. ^ab"Entrez Gene: SCN3B sodium channel, voltage-gated, type III, beta".
  7. ^Hakim P, Gurung IS, Pedersen TH, Thresher R, Brice N, Lawrence J, Grace AA, Huang CL (2008)."Scn3b knockout mice exhibit abnormal ventricular electrophysiological properties".Prog. Biophys. Mol. Biol.98 (2–3):251–66.doi:10.1016/j.pbiomolbio.2009.01.005.PMC 2764399.PMID 19351516.
  8. ^Hakim P, Brice N, Thresher R, Lawrence J, Zhang Y, Jackson AP, Grace AA, Huang CL (January 2010)."Scn3b knockout mice exhibit abnormal sino-atrial and cardiac conduction properties".Acta Physiol (Oxf).198 (1):47–59.doi:10.1111/j.1748-1716.2009.02048.x.PMC 3763209.PMID 19796257.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders


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