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SARS-CoV-2 Lambda variant

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From Wikipedia, the free encyclopedia
Variant of SARS-CoV-2

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COVID-19 pandemic
Scientifically accurate atomic model of the external structure of SARS-CoV-2. Each "ball" is an atom.
Scientifically accurate atomic model of the external structure of SARS-CoV-2. Each "ball" is an atom.
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Main article:Variants of SARS-CoV-2

TheLambda variant, also known aslineage C.37, is avariant ofSARS-CoV-2, thevirus that causesCOVID-19.[1] It was first detected inPeru in August 2020.[2] On 14 June 2021, theWorld Health Organization (WHO) named it Lambda variant[1] and designated it as avariant of interest.[3] On 16 March 2022, the WHO has de-escalated the Lambda variant to "previously circulating variants of concern".[4][5]

It has spread to at least 30 countries[6] around the world and is known to be more resistant toneutralizing antibodies compared to other strains.[7][8][9] There is evidence that suggests the Lambda variant is both more infectious and resistant to vaccines than theAlpha and/orGamma variant.[10][11]

Mutations

The Lambda genome has the followingamino acidmutations, all of which are in the virus'sspike protein code: G75V, T76I, Δ246-252, L452Q, F490S,D614G and T859N.[12]

  • Amino acid mutations of SARS-CoV-2 Lambda variant plotted on a genome map of SARS-CoV-2 with a focus on the spike.[13]
    Amino acid mutations of SARS-CoV-2 Lambda variant plotted on a genome map of SARS-CoV-2 with a focus on the spike.[13]

History

First samples of the Lambda variant were detected in Peru in August 2020[2] and by April 2021, over eighty percent of new cases of COVID-19 in Peru were from the new variant.[1][14] In mid-June 2021, 90.6% of new COVID-19 cases inArequipa and 78.1% of new cases inCusco were the Lambda variant, according to the Peruvian Ministry of Health.[15] By this time the Lambda variant had also spread throughoutSouth America and was detected in twenty-nine countries in total, especially inArgentina,Chile andEcuador.[14][16] The WHO designated the Lambda variant as a "variant of interest" on 14 June 2021.[1]

On 6 July 2021,Australia reported its first case of the Lambda variant in an overseas traveler who had been in aNew South Wales quarantine hotel in April.[17]

On 19 July 2021,Texas reported its first case of the Lambda variant.[18] On 22 July 2021,Florida reported 126 cumulative confirmed cases of the Lambda variant.[19] On 28 July 2021,University of Miami researchers announced random sampling showed 3 percent of COVID-19 patients in Jackson Memorial Health System and at University of Miami's UHealth Tower were infected with it.[20] On 5 August 2021, Louisiana reported its first case of the Lambda variant.[21]

On 7 August 2021,Japan confirmed its first case of the Lambda variant, with the infected person arriving in Japan from Peru on 20 July.[22]

On 15 August 2021, thePhilippines confirmed its first case of the Lambda variant.[23]

Statistics

Cases by country (Updated as of 23 August 2021)GISAID[24]
CountryConfirmed casesCollection date
 Chile1,48913 July 2021
 Peru1,48015 June 2021
 United States8485 August 2021
 Ecuador19420 July 2021
 Mexico18914 July 2021
 Spain1247 July 2021
 Argentina11124 June 2021
 Germany8713 July 2021
 France5619 July 2021
 Colombia5129 June 2021
 Israel259 May 2021
  Switzerland825 July 2021
 Canada2621 June 2021
 The Netherlands311 July 2021
 Saint Kitts and Nevis106 June 2021
 Belgium223 July 2021
 United Kingdom810 July 2021
 Italy1226 June 2021
 Brazil721 June 2021
 India612 April 2021
 Denmark111 August 2021
 Sweden115 July 2021
 South Africa314 July 2021
 Portugal110 June 2021
 Qatar313 April 2021
 Latvia230 April 2021
 Aruba22 June 2021
 Bolivia12 June 2021
 Uruguay115 April 2021
 Australia13 April 2021
 Lithuania119 May 2021
 Norway17 July 2021
 Estonia11 April 2021
 Russia121 March 2021
 Finland131 May 2021
 Turkey18 February 2021
 Bangladesh120 March 2021
 Japan17 August 2021
 Philippines115 August 2021[25]
 Venezuela25 May 2021
 Mayotte115 July 2021
 El Salvador330 April 2021
 Guatemala13 July 2021
 Costa Rica420 July 2021
 World (44 countries)Total:4,763Total as of 23 August 2021

See also

References

  1. ^abcd"Tracking SARS-CoV-2 variants".World Health Organization. Retrieved2021-06-17.
  2. ^ab"Weekly epidemiological update on COVID-19 - 15 June 2021"(PDF) (44 ed.).World Health Organization. 15 June 2021. Retrieved2021-08-16.Lambda has been associated with substantive rates of community transmission in multiple countries, with rising prevalence over time concurrent with increased COVID-19 incidence. The earliest sequenced samples were reported from Peru in August 2020.
  3. ^"Tracking SARS-CoV-2 variants".who.int. World Health Organization. Updated frequently.
  4. ^"Tracking SARS-CoV-2 variants (updated 2022-03-16)".www.who.int. 2022-03-16.Archived from the original on 2022-03-17. Retrieved2022-03-17.
  5. ^"Tracking SARS-CoV-2 variants (updated 2022-03-07)".www.who.int. 2022-03-07.Archived from the original on 2022-03-15. Retrieved2022-05-21.
  6. ^"Covid 19 coronavirus: Ultra-contagious Lambda variant detected in Australia".New Zealand Herald. 6 July 2021.
  7. ^Kimura, Izumi; Kosugi, Yusuke; Wu, Jiaqi; Yamasoba, Daichi; Butlertanaka, Erika P.; Tanaka, Yuri L.; Liu, Yafei; Shirakawa, Kotaro; Kazuma, Yasuhiro; Nomura, Ryosuke; Horisawa, Yoshihito; Tokunaga, Kenzo; Takaori-Kondo, Akifumi; Arase, Hisashi; Saito, Akatsuki; Nakagawa, So; Sato, Kei (28 July 2021). "SARS-CoV-2 Lambda variant exhibits higher infectivity and immune resistance".bioRxiv 10.1101/2021.07.28.454085.
  8. ^"COVID-19: Lambda variant may be more resistant to vaccines than other strains".World Is One News. 6 July 2021.
  9. ^"Lambda variant: What is the new strain of Covid detected in the UK?".The Independent. 6 July 2021.
  10. ^Mohammadi, Mehrdad; Shayestehpour, Mohammad; Mirzaei, Hamed (2021-07-01)."The impact of spike mutated variants of SARS-CoV2 [Alpha, Beta, Gamma, Delta, and Lambda] on the efficacy of subunit recombinant vaccines".The Brazilian Journal of Infectious Diseases.25 (4) 101606.doi:10.1016/j.bjid.2021.101606.ISSN 1413-8670.PMC 8367756.PMID 34428473.
  11. ^Acevedo, Mónica L.; Alonso-Palomares, Luis; Bustamante, Andrés; Gaggero, Aldo; Paredes, Fabio; Cortés, Claudia P.; Valiente-Echeverría, Fernando; Soto-Rifo, Ricardo (2021-07-01). "Infectivity and immune escape of the new SARS-CoV-2 variant of interest Lambda".medRxiv 10.1101/2021.06.28.21259673v1.
  12. ^Robertson, Sally (27 June 2021)."Lambda lineage of SARS-CoV-2 has potential to become variant of concern".news-medical.net. Retrieved2021-07-05.The Lambda variant also contained a novel deletion (Δ246-252) and multiple nonsynonymous mutations (G75V, T76I, L452Q, F490S, D614G, and T859N) in the gene that encodes the viral spike protein.
  13. ^"Spike Variants: Lambda variant, aka B.1.1.1".covdb.stanford.edu.Stanford University Coronavirus Antiviral & Resistance Database. 1 July 2021. Retrieved2021-07-05.
  14. ^ab"WHO reports on Lambda: the new variant of COVID-19 that is affecting South America".Entrepreneur. 2021-06-17. Retrieved2021-06-17.
  15. ^Acosta, Sebastián (2021-06-16)."Coronavirus en Perú | Minsa: El 90,6 % de los contagios en Arequipa se deben a la variante Lambda" [Coronavirus in Peru | Minsa: 90.6% of infections in Arequipa are due to the Lambda variant].RPP (in Spanish). Retrieved17 June 2021.
  16. ^Mendez, Rich (2021-06-16)."WHO says delta Covid variant has now spread to 80 countries and it keeps mutating".CNBC. Retrieved2021-06-17.
  17. ^"Covid-19 Australia: Strain more transmissible than Delta hits Australia".News.com.au. 6 July 2021.
  18. ^Rahman, Khaleda (2021-07-20)."Lambda COVID variant detected in Texas hospital".Newsweek. Retrieved2021-07-22.
  19. ^"US, South American researchers monitoring Lambda COVID-19 variant as cases surge". 23 July 2021. Retrieved2021-07-29.
  20. ^"New evidence shows the COVID-19 Delta variant rapidly rising".news.miami.edu. Retrieved2021-07-29.
  21. ^WBRZ."First cases of COVID Lambda variant reported in North Louisiana".WBRZ. Retrieved2021-08-06.
  22. ^"Japan confirms first case of lambda variant infection".The Japan Times. 2021-08-07. Archived fromthe original on 2021-09-29. Retrieved2021-08-07.
  23. ^Garcia, Ma. Angelica (August 15, 2021)."First lambda variant case detected in the Philippines".GMA News. RetrievedAugust 15, 2021.
  24. ^"GISAID - hCov19 Variants".www.gisaid.org. Retrieved2021-08-23.
  25. ^Press Release (August 15, 2021)."DOH, UP-PGC, and UP-NIH confirm additional COVID-19 variant cases including first case of Lambda variant".Department of Health, Government of the Philippines. Archived fromthe original on December 4, 2021. RetrievedAugust 23, 2021.
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