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REG3A

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
REG3A
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1UV0,2GO0,4MTH

Identifiers
AliasesREG3A, HIP, HIP/PAP, INGAP, PAP, PAP-H, PAP1, PBCGF, REG-III, REG3, regenerating family member 3 alpha
External IDsOMIM:167805;MGI:97478;HomoloGene:130506;GeneCards:REG3A;OMA:REG3A - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for REG3A
Genomic location for REG3A
Band2p12Start79,157,003bp[1]
End79,159,753bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for REG3A
Genomic location for REG3A
Band6|6 C3Start78,347,640bp[2]
End78,350,449bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • mucosa of ileum

  • jejunal mucosa

  • duodenum

  • body of pancreas

  • pancreatic ductal cell

  • islet of Langerhans

  • beta cell

  • testicle

  • pylorus

  • gallbladder
Top expressed in
  • Paneth cell

  • jejunum

  • duodenum

  • crypt of lieberkuhn of small intestine

  • intestinal villus

  • ileum

  • Ileal epithelium

  • pyloric antrum

  • islet of Langerhans

  • lumbar subsegment of spinal cord
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5068

18489

Ensembl

ENSG00000172016

ENSMUSG00000071356

UniProt

Q06141

P35230

RefSeq (mRNA)

NM_138938
NM_002580
NM_138937

NM_011036

RefSeq (protein)

NP_002571
NP_620354
NP_620355

NP_035166

Location (UCSC)Chr 2: 79.16 – 79.16 MbChr 6: 78.35 – 78.35 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Regenerating islet-derived protein 3 alpha (or Regenerating islet-derived protein III-alpha) formerly known asHIP/PAP (Hepatocarcinoma-Intestine-Pancreas/Pancreatitis-Associated Protein) and peptide 23[5] is aprotein that in humans is encoded by theREG3Agene.[6][7]

This gene encodes apancreaticsecretory protein that may be involved incell proliferation or differentiation. It has similarity to theC-type lectin superfamily. The enhancedexpression of this gene is observed during pancreaticinflammation andliver carcinogenesis. Multiple alternatively spliced transcript variants encoding the same protein have been described for this gene but the full length nature of some transcripts is not yet known.[7]

Reg3A (UniProt Q0614 1) is abactericidal C-typelectin that is constitutively produced in theintestine that hasantibacterial properties againstGram-positive bacteria. Bacterial killing is mediated by binding to surface-exposedcarbohydrate moieties of bacterialpeptidoglycan and executed by the formation of a hexameric pore in the membrane.[8][9][10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000172016Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000071356Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Chakraborty C, Sharma S, Katsumata N, Murphy LJ, Schroedter IC, Robertson MC, et al. (June 1995). "Plasma clearance, tissue uptake and expression of pituitary peptide 23/pancreatitis-associated protein in the rat".The Journal of Endocrinology.145 (3):461–469.doi:10.1677/joe.0.1450461.PMID 7636430.
  6. ^Dusetti NJ, Frigerio JM, Fox MF, Swallow DM, Dagorn JC, Iovanna JL (January 1994). "Molecular cloning, genomic organization, and chromosomal localization of the human pancreatitis-associated protein (PAP) gene".Genomics.19 (1):108–114.doi:10.1006/geno.1994.1019.PMID 8188210.
  7. ^ab"Entrez Gene: REG3A regenerating islet-derived 3 alpha".
  8. ^Murphy K, Weaver C (2017).Janeway's Immunobiology. Garland Science. p. 48.ISBN 978-0-8153-4505-3.
  9. ^Cash HL, Whitham CV, Behrendt CL, Hooper LV (August 2006)."Symbiotic bacteria direct expression of an intestinal bactericidal lectin".Science.313 (5790):1126–1130.Bibcode:2006Sci...313.1126C.doi:10.1126/science.1127119.PMC 2716667.PMID 16931762.
  10. ^Vaishnava S, Yamamoto M, Severson KM, Ruhn KA, Yu X, Koren O, et al. (October 2011)."The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine".Science.334 (6053):255–258.Bibcode:2011Sci...334..255V.doi:10.1126/science.1209791.PMC 3321924.PMID 21998396.

Further reading

[edit]
PDB gallery
  • 1uv0: PANCREATITIS-ASSOCIATED PROTEIN 1 FROM HUMAN
    1uv0: PANCREATITIS-ASSOCIATED PROTEIN 1 FROM HUMAN
  • 2go0: NMR solution structure of human pancreatitis-associated protein
    2go0: NMR solution structure of human pancreatitis-associated protein
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