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RBM39

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
RBM39
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2JRS,2MHN,4OO6,4OZ0,4OZ1,4YUD

Identifiers
AliasesRBM39, CAPER, CAPERalpha, FSAP59, HCC1, RNPC2, RNA binding motif protein 39
External IDsOMIM:604739;MGI:2157953;HomoloGene:136465;GeneCards:RBM39;OMA:RBM39 - orthologs
Gene location (Human)
Chromosome 20 (human)
Chr.Chromosome 20 (human)[1]
Chromosome 20 (human)
Genomic location for RBM39
Genomic location for RBM39
Band20q11.22Start35,701,347bp[1]
End35,742,312bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for RBM39
Genomic location for RBM39
Band2|2 H1Start156,147,239bp[2]
End156,180,238bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right uterine tube

  • Achilles tendon

  • right lobe of thyroid gland

  • left ovary

  • right ovary

  • left lobe of thyroid gland

  • sural nerve

  • body of uterus

  • ventricular zone

  • canal of the cervix
Top expressed in
  • genital tubercle

  • tail of embryo

  • neural layer of retina

  • ventricular zone

  • Rostral migratory stream

  • spermatocyte

  • neural tube

  • granulocyte

  • medullary collecting duct

  • Gonadal ridge
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

9584

170791

Ensembl

ENSG00000131051

ENSMUSG00000027620

UniProt

Q14498
Q5QP23

Q8VH51

RefSeq (mRNA)
NM_001242599
NM_001242600
NM_004902
NM_184234
NM_184237

NM_184241
NM_184244
NM_001323422
NM_001323423
NM_001323424

NM_001291114
NM_001291115
NM_133242
NM_001362763
NM_001362764

NM_001362765
NM_001362766
NM_001362767
NM_001362768
NM_001362769

RefSeq (protein)
NP_001229528
NP_001229529
NP_001310351
NP_001310352
NP_001310353

NP_004893
NP_909122

NP_001278043
NP_001278044
NP_573505
NP_001349692
NP_001349693

NP_001349694
NP_001349695
NP_001349696
NP_001349697
NP_001349698

Location (UCSC)Chr 20: 35.7 – 35.74 MbChr 2: 156.15 – 156.18 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

RNA-binding protein 39 is aprotein that in humans is encoded by theRBM39gene.[5][6]

Function

[edit]

The protein encoded by this gene is an RNA binding protein and possible splicing factor. The encoded protein is found in the nucleus, where it colocalizes with core spliceosomal proteins. Studies of a mouse protein with high sequence similarity to this protein suggest that this protein may act as a transcriptional coactivator for JUN/AP-1 and estrogen receptors. Multiple transcript variants encoding different isoforms have been observed for this gene.[6]

Interactions

[edit]

RBM39 has been shown tointeract withEstrogen receptor alpha,[7]Estrogen receptor beta[7] andC-jun.[7]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000131051Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000027620Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Imai H, Chan EK, Kiyosawa K, Fu XD, Tan EM (Dec 1993)."Novel nuclear autoantigen with splicing factor motifs identified with antibody from hepatocellular carcinoma".J Clin Invest.92 (5):2419–26.doi:10.1172/JCI116848.PMC 288425.PMID 8227358.
  6. ^ab"Entrez Gene: RBM39 RNA binding motif protein 39".
  7. ^abcJung DJ, Na SY, Na DS, Lee JW (Jan 2002)."Molecular cloning and characterization of CAPER, a novel coactivator of activating protein-1 and estrogen receptors".J. Biol. Chem.277 (2):1229–34.doi:10.1074/jbc.M110417200.PMID 11704680.

Further reading

[edit]
PDB gallery
  • 2cq4: solution structure of RNA binding domain in RNA binding motif protein 23
    2cq4: solution structure of RNA binding domain in RNA binding motif protein 23


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