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RBM3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
RBM3
Identifiers
AliasesRBM3, IS1-RNPL, RNPL, RNA binding motif (RNP1, RRM) protein 3, RNA binding motif protein 3
External IDsOMIM:300027;MGI:3642874;HomoloGene:31404;GeneCards:RBM3;OMA:RBM3 - orthologs
Gene location (Human)
X chromosome (human)
Chr.X chromosome (human)[1]
X chromosome (human)
Genomic location for RBM3
Genomic location for RBM3
BandXp11.23Start48,574,449bp[1]
End48,581,162bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Achilles tendon

  • human penis

  • monocyte

  • synovial joint

  • nipple

  • gastric mucosa

  • saphenous vein

  • skin of leg

  • body of pancreas

  • olfactory zone of nasal mucosa
    n/a
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5935

100043257

Ensembl

ENSG00000102317

n/a

UniProt

P98179

n/a

RefSeq (mRNA)

NM_001017430
NM_001017431
NM_006743

XM_036156140

RefSeq (protein)

NP_006734

n/a

Location (UCSC)Chr X: 48.57 – 48.58 Mbn/a
PubMed search[2][3]
Wikidata
View/Edit HumanView/Edit Mouse

Putative RNA-binding protein 3 is aprotein that in humans is encoded by theRBM3gene.[4][5]

Function

[edit]

This gene is a member of theglycine-rich RNA-binding protein family and encodes a protein with one RNA recognition motif (RRM) domain. Expression of this gene is induced by cold shock and low oxygen tension. Apseudogene exists on chromosome 1. Alternate transcriptional splice variants, encoding differentisoforms, have been characterized.[5] RBM3 contains apoison exon whose inclusion is lowered duringhypothermia.[6]

RBM3 is cold-induced RNA binding protein and is involved in mRNA biogenesis exerts anti-apoptotic effects.[7] According toantibody-based profiling andtranscriptomics analysis, RBM3 protein is present in all analysed human tissues[8] and based onconfocal microscopy mainly localised to thenucleoplasm.[9]

Clinical significance

[edit]

RBM3 is aproto-oncogene that is associated with tumor progression and metastasis and is a potential cancerbiomarker.[7] Based on patient survival data, high levels of RBM3 protein in tumor cells is a favourableprognostic biomarker incolorectal cancer.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000102317Ensembl, May 2017
  2. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^Derry JM, Kerns JA, Francke U (December 1995). "RBM3, a novel human gene in Xp11.23 with a putative RNA-binding domain".Human Molecular Genetics.4 (12):2307–11.doi:10.1093/hmg/4.12.2307.PMID 8634703.
  5. ^ab"Entrez Gene: RBM3 RNA binding motif (RNP1, RRM) protein 3".
  6. ^Lin, Julie Qiaojin; Khuperkar, Deepak; Pavlou, Sofia; Makarchuk, Stanislaw; Patikas, Nikolaos; Lee, Flora CY; Zbiegly, Julia M; Kang, Jianning; Field, Sarah F; Bailey, David MD; Freeman, Joshua L; Ule, Jernej; Metzakopian, Emmanouil; Ruepp, Marc‐David; Mallucci, Giovanna R (2023-07-17)."HNRNPH1 regulates the neuroprotective cold‐shock protein RBM3 expression through poison exon exclusion".The EMBO Journal.42 (14).doi:10.15252/embj.2022113168.ISSN 0261-4189.
  7. ^abZhou RB, Lu XL, Zhang CY, Yin DC (March 2017)."RNA binding motif protein 3: a potential biomarker in cancer and therapeutic target in neuroprotection".Oncotarget.8 (13):22235–22250.doi:10.18632/oncotarget.14755.PMC 5400660.PMID 28118608.
  8. ^"Tissue expression of RBM3 - Summary".The Human Protein Atlas.
  9. ^"Cell atlas - RBM3".The Human Protein Atlas.
  10. ^"Expression of RBM3 in cancer - Summary".The Human Protein Atlas.

Further reading

[edit]
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