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RAR-related orphan receptor beta

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

RORB
Identifiers
AliasesRORB, NR1F2, ROR-BETA, RZR-BETA, RZRB, bA133M9.1, RAR-related orphan receptor beta, RAR related orphan receptor B, EIG15
External IDsOMIM:601972;MGI:1343464;HomoloGene:38250;GeneCards:RORB;OMA:RORB - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for RORB
Genomic location for RORB
Band9q21.13Start74,497,335bp[1]
End74,693,177bp[1]
Gene location (Mouse)
Chromosome 19 (mouse)
Chr.Chromosome 19 (mouse)[2]
Chromosome 19 (mouse)
Genomic location for RORB
Genomic location for RORB
Band19|19 BStart18,907,969bp[2]
End19,088,560bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • endothelial cell

  • Brodmann area 23

  • middle temporal gyrus

  • parietal lobe

  • postcentral gyrus

  • retinal pigment epithelium

  • primary visual cortex

  • superior frontal gyrus

  • entorhinal cortex

  • endometrium
Top expressed in
  • internal granular layer

  • medial geniculate nucleus

  • medial dorsal nucleus

  • lateral geniculate nucleus

  • Rostral migratory stream

  • retina

  • neural layer of retina

  • retinal pigment epithelium

  • lumbar subsegment of spinal cord

  • posterior horn of spinal cord
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

6096

225998

Ensembl

ENSG00000198963

ENSMUSG00000036192

UniProt

Q92753
Q58EY0

Q8R1B8

RefSeq (mRNA)

NM_006914
NM_001365023

NM_001043354
NM_001289921
NM_146095

RefSeq (protein)

NP_008845
NP_001351952

NP_001036819
NP_001276850
NP_666207

Location (UCSC)Chr 9: 74.5 – 74.69 MbChr 19: 18.91 – 19.09 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

RAR-related orphan receptor beta (ROR-beta), also known asNR1F2 (nuclear receptor subfamily 1, group F, member 2) is anuclear receptor that in humans is encoded by theRORB gene.[5]

Function

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The protein encoded by this gene is a member of the NR1 subfamily of nuclear hormone receptors. It is a DNA-binding protein that can bind as a monomer or as a homodimer tohormone response elements upstream of several genes to enhance the expression of those genes. The specific functions of this protein are not known, but it has been shown to interact withNM23-2, anucleoside-diphosphate kinase involved in organogenesis and differentiation.[6]

In the brain, ROR-beta is concentrated in layer 4 of the cerebral cortex, where it plays a role in the development of structures such as barrel columns.[7]

A mutation in this gene also results in the loss of spinal cord interneurons and of saltatorial locomotion,[8] a type of hopping gait that in mammals can be found in rabbits, hares, kangaroos, and some species of rodents.

Interactions

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RAR-related orphan receptor beta has been shown tointeract withNME1.[9]

See also

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References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000198963Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000036192Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Giguère V, Tini M, Flock G, Ong E, Evans RM, Otulakowski G (March 1994)."Isoform-specific amino-terminal domains dictate DNA-binding properties of ROR alpha, a novel family of orphan hormone nuclear receptors".Genes & Development.8 (5):538–553.doi:10.1101/gad.8.5.538.PMID 7926749.
  6. ^"Entrez Gene: RORB RAR-related orphan receptor B".
  7. ^Jabaudon D, Shnider SJ, Tischfield DJ, Galazo MJ, Macklis JD (May 2012)."RORβ induces barrel-like neuronal clusters in the developing neocortex".Cerebral Cortex.22 (5):996–1006.doi:10.1093/cercor/bhr182.PMC 3328343.PMID 21799210.
  8. ^Carneiro M, Vieillard J, Andrade P, Boucher S, Afonso S, Blanco-Aguiar JA, et al. (March 2021)."A loss-of-function mutation in RORB disrupts saltatorial locomotion in rabbits".PLOS Genetics.17 (3) e1009429.doi:10.1371/journal.pgen.1009429.PMC 7993613.PMID 33764968.
  9. ^Paravicini G, Steinmayr M, André E, Becker-André M (October 1996). "The metastasis suppressor candidate nucleotide diphosphate kinase NM23 specifically interacts with members of the ROR/RZR nuclear orphan receptor subfamily".Biochemical and Biophysical Research Communications.227 (1):82–87.doi:10.1006/bbrc.1996.1471.PMID 8858107.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1k4w: X-ray structure of the orphan nuclear receptor ROR beta ligand-binding domain in the active conformation
    1k4w: X-ray structure of the orphan nuclear receptor ROR beta ligand-binding domain in the active conformation
  • 1n4h: Characterization of ligands for the orphan nuclear receptor RORbeta
    1n4h: Characterization of ligands for the orphan nuclear receptor RORbeta
  • 1nq7: Characterization of ligands for the orphan nuclear receptor RORbeta
    1nq7: Characterization of ligands for the orphan nuclear receptor RORbeta
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
Amino acids and
similar/related
Lipids
Peptides/proteins
Others and
non-receptor
Stub icon

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