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Prostaglandin D2 synthase

From Wikipedia, the free encyclopedia
(Redirected fromProstaglandin D synthase)
Protein-coding gene in the species Homo sapiens
PTGDS
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

4OS8,2WWP,3O19,3O22,3O2Y,4IMN,4IMO,4ORR,4ORS,4ORU,4ORW,4ORX,4ORY,4OS0,4OS3

Identifiers
AliasesPTGDS, L-PGDS, LPGDS, PDS, PGD2, PGDS, PGDS2, prostaglandin D2 synthase
External IDsOMIM:176803;MGI:99261;HomoloGene:737;GeneCards:PTGDS;OMA:PTGDS - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for PTGDS
Genomic location for PTGDS
Band9q34.3Start136,975,092bp[1]
End136,981,742bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for PTGDS
Genomic location for PTGDS
Band2 A3|2 17.28 cMStart25,356,721bp[2]
End25,360,058bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • left testis

  • right testis

  • C1 segment

  • substantia nigra

  • putamen

  • apex of heart

  • right auricle of heart

  • temporal lobe

  • amygdala

  • caudate nucleus
Top expressed in
  • vestibular membrane of cochlear duct

  • olfactory tubercle

  • median eminence

  • arcuate nucleus

  • mammillary body

  • iris

  • optic nerve

  • pontine nuclei

  • retinal pigment epithelium

  • stria vascularis
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5730

19215

Ensembl

ENSG00000107317

ENSMUSG00000015090

UniProt

P41222
Q5SQ11

O09114

RefSeq (mRNA)

NM_000954

NM_008963

RefSeq (protein)

NP_000945

NP_032989

Location (UCSC)Chr 9: 136.98 – 136.98 MbChr 2: 25.36 – 25.36 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Prostaglandin-H2 D-isomerase (PTGDS) is anenzyme that in humans is encoded by thePTGDSgene.[5][6]

Function

[edit]

The protein encoded by this gene is a glutathione-independent prostaglandin D synthase that catalyzes the conversion ofprostaglandin H2 (PGH2) toprostaglandin D2 (PGD2). PGD2 functions as a neuromodulator as well as a trophic factor in the central nervous system. PGD2 is also involved in smooth muscle contraction/relaxation and is a potent inhibitor of platelet aggregation. This gene is preferentially expressed in brain. Studies with transgenic mice over-expressing this gene suggest that this gene may be also involved in the regulation of non-rapid eye movement sleep.[6] Furthermore, PTGDS and its product PGD2 are elevated in the bald-scalp areas of men with male pattern baldness (androgenetic alopecia).[7]

Clinical use

[edit]

Prostaglandin D2 synthase is used clinically as a diagnostic marker forliquorrhea, that is, to check whether fluid leaking from the nose or ear containscerebrospinal fluid.[8] This is important in the assessment ofhead trauma severity. In a medical context, the older term "beta-trace protein" is frequently used to refer to PTGDS.

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000107317Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000015090Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Nagata A, Suzuki Y, Igarashi M, Eguchi N, Toh H, Urade Y, Hayaishi O (May 1991)."Human brain prostaglandin D synthase has been evolutionarily differentiated from lipophilic-ligand carrier proteins".Proceedings of the National Academy of Sciences of the United States of America.88 (9):4020–4.Bibcode:1991PNAS...88.4020N.doi:10.1073/pnas.88.9.4020.PMC 51585.PMID 1902577.
  6. ^ab"Entrez Gene: PTGDS prostaglandin D2 synthase 21kDa (brain)".
  7. ^Garza LA, Liu Y, Yang Z, Alagesan B, Lawson JA, Norberg SM, Loy DE, Zhao T, Blatt HB, Stanton DC, Carrasco L, Ahluwalia G, Fischer SM, FitzGerald GA, Cotsarelis G (Mar 2012)."Prostaglandin D2 inhibits hair growth and is elevated in bald scalp of men with androgenetic alopecia".Science Translational Medicine.4 (126): 126ra34.doi:10.1126/scitranslmed.3003122.PMC 3319975.PMID 22440736.
  8. ^Bachmann G, Petereit H, Djenabi U, Michel O (Mar 2002). "Predictive values of beta-trace protein (prostaglandin D synthase) by use of laser-nephelometry assay for the identification of cerebrospinal fluid".Neurosurgery.50 (3):571–6, discussion 576–7.doi:10.1227/00006123-200203000-00027.PMID 11841726.

Further reading

[edit]

External links

[edit]
  • Overview of all the structural information available in thePDB forUniProt:P41222 (Human Prostaglandin-H2 D-isomerase) at thePDBe-KB.
  • Overview of all the structural information available in thePDB forUniProt:O09114 (Mouse Prostaglandin-H2 D-isomerase) at thePDBe-KB.
Isomerases: intramolecularoxidoreductases (EC 5.3)
5.3.1:Aldoses/Ketoses
5.3.2:Keto/Enol
5.3.3: C = C
5.3.4: S-S
5.3.99: other
Precursor
Prostanoids
Leukotrienes
Ungrouped
Receptor
(ligands)
DP (D2)Tooltip Prostaglandin D2 receptor
DP1Tooltip Prostaglandin D2 receptor 1
DP2Tooltip Prostaglandin D2 receptor 2
EP (E2)Tooltip Prostaglandin E2 receptor
EP1Tooltip Prostaglandin EP1 receptor
EP2Tooltip Prostaglandin EP2 receptor
EP3Tooltip Prostaglandin EP3 receptor
EP4Tooltip Prostaglandin EP4 receptor
Unsorted
FP (F)Tooltip Prostaglandin F receptor
IP (I2)Tooltip Prostacyclin receptor
TP (TXA2)Tooltip Thromboxane receptor
Unsorted
Enzyme
(inhibitors)
COX
(
PTGS)
PGD2STooltip Prostaglandin D synthase
PGESTooltip Prostaglandin E synthase
PGFSTooltip Prostaglandin F synthase
PGI2STooltip Prostacyclin synthase
TXASTooltip Thromboxane A synthase
Others


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