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Phosphonate

From Wikipedia, the free encyclopedia
Organic compound containing C–PO(OR)2 groups
Not to be confused withphosphate.
For phosphonic acid and the anion in the singular, seephosphorous acid andphosphite anion.
General ester of phosphonic acid; in fact, the phosphorus has aformal charge of +1, the oxygen above it has a formal charge of −1, and the bond between them is single.

Inorganic chemistry,phosphonates orphosphonic acids areorganophosphorus compounds containingC−PO(OR)2groups, where R is an organic group (alkyl,aryl). If R is hydrogen then the compound is adialkyl phosphite, which is a different functional group. Phosphonic acids, typically handled as salts, are generallynonvolatile solids that are poorlysoluble inorganic solvents, but soluble in water and commonalcohols.

Many commercially important compounds are phosphonates, includingglyphosate (the active molecule of the herbicideRoundup), andethephon, a widely used plant growth regulator.Bisphosphonates are popular drugs for treatment ofosteoporosis.[1]

Clodronic acid is abisphosphonate used as a drug to treatosteoporosis.

Inbiochemistry andmedicinal chemistry, phosphonate groups are used as stablebioisosteres for phosphate, such as in the antiviral nucleotide analog,Tenofovir, one of the cornerstones of anti-HIV therapy. And there is an indication that phosphonate derivatives are "promising ligands fornuclear medicine."[2]

Basic properties

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Phosphonates feature tetrahedral phosphorus centers. They are structurally closely related to (and often prepared from)phosphorous acid.[3]

Phosphonic acids and derivatives are chemically and structurally related to phosphorous acid.

Phosphonate salts are the result of deprotonation of phosphonic acids, which are diprotic acids:

RPO(OH)2 + NaOH → H2O + RPO(OH)(ONa) (monosodium phosphonate)
RPO(OH)(ONa) + NaOH → H2O + RPO(ONa)2 (disodium phosphonate)

Phosphonate esters are the result of condensation of phosphonic acids with alcohols.

Synthesis

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Several methods exist for the preparation of phosphonic acids and their salts.

From phosphonic acid

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Most processes begin withphosphorous acid (aka phosphonic acid, H3PO3), exploiting its reactive P−H bond.[1][3]

Phosphonic acid can be alkylated via theKabachnik–Fields reaction orPudovik reaction to giveaminophosphonate, which are useful aschelating agents. One example is the industrial preparation ofnitrilotris(methylenephosphonic acid):

NH3 + 3 H3PO3 + 3 CH2O → N(CH2PO3H2)3 + 3 H2O

Phosphonic acid also can be alkylated withacrylic acid derivatives to afford carboxyl functionalized phosphonic acids. This reaction is a variant of theMichael addition:

CH2=CHCO2R + 3 H3PO3 → (HO)2P(O)CH2CH2CO2R

In theHirao coupling dialkylphosphites (which can also be viewed as di-esters of phosphonic acid: (O=PH(OR)2) undergo a palladium-catalyzed coupling reaction with anaryl halide to form a phosphonate.

Michaelis-Arbuzov reaction

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Phosphonic esters are prepared using theMichaelis–Arbuzov reaction. For example, methyl iodide catalyses the conversion of trimethylphosphite to the phosphonate esterdimethyl methylphosphonate:

P(OMe)3 → MePO(OMe)2

These esters can be hydrolysed to the acid (Me = methyl):

MePO(OMe)2 + H2O → MePO(OH)2 + 2 MeOH

In theMichaelis–Becker reaction, a hydrogen phosphonate diester is first deprotonated and the resulting anion is alkylated.

From phosphorus trichloride

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Vinylphosphonic acid can be prepared by the reaction of PCl3 andacetaldehyde:

PCl3 + CH3CHO → CH3CH(O)PCl+
3

This adduct reacts with acetic acid:

CH3CH(O)PCl+
3
+ 2 CH3CO2H → CH3CH(Cl)PO(OH)2 + 2 CH3COCl

This chloride undergoes dehydrochlorination to afford the target:

CH3CH(Cl)PO(OH)2 → CH2=CHPO(OH)2 + HCl

In theKinnear–Perren reaction alkylphosphonyl dichlorides and esters are generated byalkylation ofphosphorus trichloride in the presence ofaluminium trichloride. Alkyltrichlorophosphonium salts are intermediates:[1]

PCl3 + RCl + AlCl3 → RPCl+
3
+ AlCl
4

The RPCl+
3
product can then be decomposed with water to produce an alkylphosphonic dichloride RP(=O)Cl2.

Reactions

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Hydrolysis

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Phosphonate esters are generally susceptible to hydrolysis under both acidic and basic conditions. Cleavage of the P-C bond is harder but can be achieved under aggressive conditions.

O=PC(OR)2 + 2 H2O → O=PC(OH)2 + 2 ROH

Horner–Wadsworth–Emmons reaction

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In theHorner–Wadsworth–Emmons reaction dialkyl-phosphonates are deprotonated to give stabilizedcarbanions, which react withaldehydes to give E-alkenes with elimination of a dialkyl-phosphate.[4]

The Horner–Wadsworth–Emmons reaction
The Horner–Wadsworth–Emmons reaction

Structural sub-classes

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Bisphosphonates

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General structure of biphosphonates
Main article:Bisphosphonate

Compounds containing 2geminal phosphonate groups are known asbisphosphonates. They were first synthesized in 1897 byVon Baeyer andHofmann and now form the basis for an important class of drugs, used to treat osteoporosis and similar diseases. Examples includeHEDP (etidronic acid or Didronel), which is prepared from phosphorous acid andacetic anhydride:[1]

2 H3PO3 + (CH3CO)2O → CH3C(OH)(PO3H2)2 + CH3CO2H

Thiophosphonates

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EMPTA (Thione)
VX (Thiol)

Athiophosphonate group is a functional group related to phosphonate by substitution of an oxygen atom for a sulphur. They are a reactive component of manypesticides andnerve agents. Substituted thiophosphonates can have two mainstructural isomers bonding though either O or S groups to give thione and thiol forms respectively. This is a property they share with related functional groups such asthiocarboxylic acids andorganothiophosphates.

Phosphonamidates

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Not to be confused withPhosphoramidate,Phosphonamidite, orPhosphoramidite.

Phosphonamidates are related to phosphonates by substitution of an oxygen atom for a nitrogen. They are a rarely encountered functional group. The nerve agentTabun is an example.

Occurrence in nature

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Glyphosate, part of the herbicide "Roundup", is a phosphonate.
2-aminoethylphosphonic acid: the first identified natural phosphonate

Phosphonates are one of the three sources of phosphate intake in biological cells.[citation needed] The other two are inorganic phosphate and organophosphates.

The naturally occurring phosphonate 2-aminoethylphosphonic acid was first identified in 1959 in plants and many animals, where it is localized in membranes. Phosphonates are quite common among different organisms, fromprokaryotes toeubacteria andmushrooms,mollusks,insects and others. They were first reported in natural soils by Newman and Tate (1980). The biological role of the natural phosphonates is still poorly understood. Bis- or polyphosphonates have not been found to occur naturally.

A number of natural product phosphonate substances withantibiotic properties have been identified.[5] Phosphonate natural product antibiotics includefosfomycin which is approved by FDA for the treatment of non-complicatedurinary tract infection as well as several pre-clinically investigated substances such as Fosmidomycin (inhibitor isoprenyl synthase), SF-2312 (inhibitor of the glycolytic enzymeenolase,[6] and substances of unknown mode of actions such asalahopcin. Although phosphonates are profoundly cell impermeable, natural product phosphonate antibiotics are effective against a number of organisms, because many bacterial species express glycerol-3-phosphate and glucose-6-phosphate importers, which can be hijacked by phosphonate antibiotics. Fosfomycin resistant bacterial strains frequently have mutations that inactivate these transporters; however, such mutations are not maintained in the absence of antibiotic because of the fitness cost they impose.

Uses

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In 1998 the consumption of phosphonates was 56,000 tons worldwide – 40,000 tons in the US, 15,000 tons in Europe and less than 800 tons in Japan. The demand of phosphonates grows steadily at 3% annually.

Metal chelants

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Since the work ofGerold Schwarzenbach in 1949, phosphonic acids are known as effectivechelating agents. The introduction of anamine group into the molecule to obtain −NH2−C−PO(OH)2 increases the metal binding abilities of the phosphonate. Examples for such compounds are NTMP, EDTMP and DTPMP. These phosphonates are the structural analogues to the well-knownaminopolycarboxylate such asEDTA. The stability of the metal complexes increases with increasing number of phosphonic acid groups. Phosphonates are highly water-soluble while the phosphonic acids are only sparingly so.

Phosphonates are effective chelating agents. That is, they bind tightly to di- and trivalent metal ions, which is useful inwater softening. In this way, they prevent formation of insoluble precipitates (scale). The binding of these ligands also suppresses the catalytic properties of metal ions. They are stable under harsh conditions. For these reasons, an important industrial use of phosphonates is in cooling waters, desalination systems, and in oil fields to inhibit scale formation. Phosphonates are also regularly used in reverse osmosis systems as antiscalants. Phosphonates in cooling water systems also serve to control corrosion of iron and steel. In pulp and paper manufacturing and in textile industry they serve as "peroxide bleach stabilizers", by chelating metals that could inactivate the peroxide. In detergents they are used as a combination of chelating agent, scale inhibitor, and bleach stabilizer. Phosphonates are also increasingly used in medicine to treat disorders associated with bone formation and calcium metabolism. Furthermore, they serve as carriers for radionuclides in bone cancer treatments (seesamarium-153-ethylene diamine tetramethylene phosphonate).

Concrete admixtures

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Phosphonates are also used as concrete retarder.[7][8] They delay the cement setting time, allowing a longer time to place the concrete or to spread the cement hydration heat on a longer period of time to avoid too high temperature and resulting cracks. They also have favourable dispersing properties and so are investigated as a possible new class of superplasticizers. However, presently, phosphonates are not commercially available as superplasticizers. Superplasticizers are concrete admixtures designed to increase the concrete fluidity and workability of concrete or to decrease its water-to-cement (w/c) ratio. By reducing the water content in concrete, it decreases its porosity, improving so the mechanical properties (compressive and tensile strength) and the durability of concrete (lower water, gas and solutes transport properties).[9]

Warheads in proteomics

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Phosphonates and specially diarylphosphonates are also reported to be used as "warhead" or reactive site in proteomics analysis.[10]

Medicine

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In medicine, phosphonates and bisphosphonates are commonly used as inhibitors of enzymes which utilize phosphates and diphosphates as substrates. Most notably, these enzymes include those that produce the intermediates of cholesterol biosynthesis.[11]

Phosphonatenucleotide analogues such astenofovir,cidofovir andadefovir are critical antiviral medications, which in various pro-drug forms are used for the treatment ofHIV,hepatitis B and others.

Niche uses

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In conjunction with organosilicates, phosphonates are also used to treat "sudden oak death", which is caused by the fungus-like eukaryotePhytophthora ramorum.

Toxicology

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The toxicity of phosphonates to organisms living in water is low. Reported values for 48-hour LC50 values for fish are between 0.1 and 1.1 mM. Also thebioconcentration factor for fish is very low.

Biodegradation

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In nature bacteria play a major role in the degradation of phosphonates.[12] Due to the presence of natural phosphonates in the environment, bacteria have evolved the ability to metabolize phosphonates as nutrient sources. Some bacteria use phosphonates as a phosphorus source for growth. Aminophosphonates can also be used as sole nitrogen source by some bacteria. The polyphosphonates used in industry differ greatly from natural phosphonates such as 2-aminoethylphosphonic acid, because they are much larger, carry a high negative charge and are complexed with metals. Biodegradation tests with sludge from municipal sewage treatment plants with HEDP and NTMP showed no indication for any degradation. An investigation of HEDP, NTMP, EDTMP and DTPMP in standard biodegradation tests also failed to identify any biodegradation. It was noted, however, that in some tests due to the high sludge to phosphonate ratio, removal of the test substance from solution observed as loss of DOC was observed. This factor was attributed to adsorption rather than biodegradation. However, bacterial strains capable of degrading aminopolyphosphonates and HEDP under P-limited conditions have been isolated from soils, lakes, wastewater, activated sludge and compost.

"No biodegradation of phosphonates during water treatment is observed butphotodegradation of the Fe(III)-complexes is rapid. Aminopolyphosphonates are also rapidly oxidized in the presence of Mn(II) and oxygen and stable breakdown products are formed that have been detected in wastewater. The lack of information about phosphonates in the environment is linked to analytical problems of their determination at trace concentrations in natural waters. Phosphonates are present mainly as Ca and Mg-complexes in natural waters and therefore do not affect metal speciation or transport."[13] Phosphonates interact strongly with some surfaces, which results in a significant removal in technical and natural systems.

Phosphonate compounds

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  • Tenofovir alafenamide: A pro-drug of the nucleotide analoguetenofovir, critical for HIV treatment.
  • AMPA:Aminomethylphosphonic acid, degradation product of glyphosate
  • Vinylphosphonic acid: monomer
  • Dimethyl methylphosphonate (DMMP), one of the simplest phosphonate diesters
  • Etidronic acid (HEDP): 1-hydroxyethylidene-1,1-diphosphonic acid, used in detergents, water treatment, cosmetics and pharmaceuticals
  • ATMP: Aminotris(methylenephosphonic acid), chelating agent
  • EDTMP: Ethylenediaminetetra(methylenephosphonic acid), chelating agent
  • TDTMP: Tetramethylenediaminetetra(methylenephosphonic acid), chelating agent
  • HDTMP: Hexamethylenediaminetetra(methylenephosphonic acid), chelating agent
  • DTPMP: Diethylenetriaminepenta(methylenephosphonic acid), chelating agent
  • PBTC: Phosphonobutanetricarboxylic acid
  • PMIDA: N-(phosphonomethyl)iminodiacetic acid
  • CEPA: 2-carboxyethyl phosphonic acid
  • HPAA: 2-Hydroxyphosphonocarboxylic acid
  • AMP: Aminotris(methylenephosphonic acid)
  • BPMG:N,N-Bis(phosphonomethyl)glycine
  • Glyphosate: a common agricultural herbicide
  • Foscarnet: for treatment of herpes
  • Perzinfotel: for treatment of stroke
  • SF2312: a natural product phosphonate antibiotic inhibitor ofenolase
  • Selfotel: an abandoned experimental drug for stroke

See also

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References

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  1. ^abcdSvara, J.; Weferling, N.; Hofmann, T. "Phosphorus Compounds, Organic," inUllmann's Encyclopedia of Industrial Chemistry, Wiley-VCH, Weinheim, 2008.doi:10.1002/14356007.a19_545.pub2.
  2. ^Pazderová, Lucia; David, Tomáš; Hlinová, Veronika; Plutnar, Jan; Kotek, Jan; Lubal, Přemysl; Kubíček, Vojtěch; Hermann, Petr (2020-06-15)."Cross-Bridged Cyclam with Phosphonate and Phosphinate Pendant Arms: Chelators for Copper Radioisotopes with Fast Complexation".Inorganic Chemistry.59 (12):8432–8443.doi:10.1021/acs.inorgchem.0c00856.ISSN 0020-1669.PMID 32437603.S2CID 218834212.
  3. ^abModern Phosphonate Chemistry by Philippe Savignac and Bogdan Iorga, CRC Press, Boca Raton, FL, 2003.ISBN 0-8493-1099-7
  4. ^Boutagy, John; Thomas, Richard (February 1974). "Olefin synthesis with organic phosphonate carbanions".Chemical Reviews.74 (1):87–99.doi:10.1021/cr60287a005.
  5. ^Ju KS, Doroghazi JR, Metcalf WW (2014)."Genomics-enabled discovery of phosphonate natural products and their biosynthetic pathways".J. Ind. Microbiol. Biotechnol.41 (2):345–356.doi:10.1007/s10295-013-1375-2.PMC 3946943.PMID 24271089.
  6. ^Leonard PG, Satani N, Maxwell D, Lin YH, Hammoudi N, Peng Z, Pisaneschi F, Link TM, Lee GR, Sun D, Prasad BA, Di Francesco ME, Czako B, Asara JM, Wang YA, Bornmann W, DePinho RA, Muller FL (December 2016)."SF2312 is a natural phosphonate inhibitor of enolase".Nature Chemical Biology.12 (12):1053–1058.doi:10.1038/nchembio.2195.PMC 5110371.PMID 27723749.
  7. ^Ramachandran, V. S.; Lowery, M. S.; Wise, T.; Polomark, G. M. (1993)."The role of phosphonates in the hydration of Portland cement".Materials and Structures.26 (7):425–432.doi:10.1007/BF02472943.ISSN 0025-5432.S2CID 97857221.
  8. ^Collier, Nicholas C.; Milestone, Neil B.; Travis, Karl P.; Gibb, Fergus.G.F. (2016)."The effect of organic retarders on grout thickening and setting during deep borehole disposal of high-level radioactive waste".Progress in Nuclear Energy.90:19–26.Bibcode:2016PNuE...90...19C.doi:10.1016/j.pnucene.2016.02.021.ISSN 0149-1970.
  9. ^Flatt, R.; Schober, I. (2012). "Superplasticizers and the rheology of concrete".Understanding the Rheology of Concrete. pp. 144–208.doi:10.1533/9780857095282.2.144.ISBN 9780857090287.
  10. ^Carlson, Erin E.; Cravatt, Benjamin F. (2007)."Chemoselective probes for metabolite enrichment and profiling".Nature Methods.4 (5):429–435.doi:10.1038/nmeth1038.PMID 17417646.
  11. ^Wiemer, AJ; Hohl, RJ; Wiemer, DF (June 2009). "The intermediate enzymes of isoprenoid metabolism as anticancer targets".Anti-Cancer Agents in Medicinal Chemistry.9 (5):526–42.doi:10.2174/187152009788451860.PMID 19519294.
  12. ^Huang J, Su Z, Xu Y (November 2005). "The evolution of microbial phosphonate degradative pathways".Journal of Molecular Evolution.61 (5):682–90.Bibcode:2005JMolE..61..682H.doi:10.1007/s00239-004-0349-4.PMID 16245012.S2CID 13414302.
  13. ^Nowack Bernd (2003). "Environmental chemistry of phosphonates".Water Research.37 (11):2533–2546.Bibcode:2003WatRe..37.2533N.doi:10.1016/S0043-1354(03)00079-4.PMID 12753831.

Further reading

[edit]
Hydrocarbons
(only C and H)
Onlycarbon,
hydrogen,
andoxygen
(only C, H and O)
R-O-R
carbonyl
carboxy
Only one
element,
not being
carbon,
hydrogen,
or oxygen
(one element,
not C, H or O)
Nitrogen
Silicon
Phosphorus
Arsenic
Sulfur
Boron
Selenium
Tellurium
Polonium
Halo
Other
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