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Peroxisome proliferator-activated receptor

From Wikipedia, the free encyclopedia
Group of nuclear receptor proteins
PPAR -alpha and -gamma pathways.

In the field ofmolecular biology, theperoxisome proliferator–activated receptors (PPARs) are a group ofnuclear receptorproteins that function astranscription factors regulatinggene expression.[1] PPARs play essential roles in regulatingcellular differentiation,development, andmetabolism (carbohydrate,lipid,protein),[2] andtumorigenesis[3][4][5]

Nomenclature and tissue distribution

[edit]
Peroxisome proliferator-activated receptor alpha
Identifiers
SymbolPPARA
Alt. symbolsPPAR
NCBI gene5465
HGNC9232
OMIM170998
RefSeqNM_001001928
UniProtQ07869
Other data
LocusChr. 22q12-q13.1
Search for
StructuresSwiss-model
DomainsInterPro
Peroxisome proliferator-activated receptor gamma
Identifiers
SymbolPPARG
NCBI gene5468
HGNC9236
OMIM601487
RefSeqNM_005037
UniProtP37231
Other data
LocusChr. 3p25
Search for
StructuresSwiss-model
DomainsInterPro
Peroxisome proliferator-activated receptor delta
Identifiers
SymbolPPARD
NCBI gene5467
HGNC9235
OMIM600409
RefSeqNM_006238
UniProtQ03181
Other data
LocusChr. 6p21.2
Search for
StructuresSwiss-model
DomainsInterPro

Three types of PPARs have been identified: alpha,gamma, and delta (beta):[4]

History

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These agents,pharmacologically related to thefibrates, were discovered in the early 1980s.

PPARs were originally identified inXenopus frogs as receptors that induce the proliferation ofperoxisomes in cells in 1992.[7] The first PPAR (PPARα) was discovered in 1990 during the search for a molecular target of a group of agents then referred to asperoxisome proliferators, as they increased peroxisomal numbers in rodent liver tissue, apart from improvinginsulin sensitivity.[8]

When it turned out that PPARs played a versatile role in biology, the agents were in turn termedPPAR ligands. The best-known PPAR ligands are thethiazolidinediones.

After PPARδ (delta) was identified in humans in 1992,[9] it turned out to be closely related to PPARβ (beta), previously described during the same year in anamphibian,Xenopus. The term "PPARδ" is generally used in the US, while "PPARβ" has remained in Europe, where this receptor was initially discovered.

PPARs were named because they induce peroxisome proliferation in rodents, but this induction has not been verified in humans.[10][11]

Physiological function

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All PPARsheterodimerize with theretinoid X receptor (RXR) and bind to specific regions on theDNA of target genes. These DNA sequences are termed PPREs (peroxisome proliferatorhormone response elements). The DNAconsensus sequence is AGGTCANAGGTCA, with N being anynucleotide. In general, this sequence occurs in the promoter region of agene, and, when thePPAR binds its ligand,transcription of target genes is increased or decreased, depending on the gene. The RXR also forms aheterodimer with a number of other receptors (e.g.,vitamin D andthyroid hormone).

The function of PPARs is modified by the precise shape of their ligand-binding domain (see below) induced by ligand binding and by a number ofcoactivator andcorepressor proteins, the presence of which can stimulate or inhibit receptor function, respectively.[12]

Endogenous ligands for the PPARs includefree fatty acids,eicosanoids andVitamin B3.PPARγ is activated by PGJ2 (aprostaglandin) and certain members of the5-HETE family ofarachidonic acid metabolites including 5-oxo-15(S)-HETE and 5-oxo-ETE.[13] In contrast, PPARα is activated byleukotriene B4. Certain members of the15-hydroxyeicosatetraenoic acid family of arachidonic acid metabolites, including 15(S)-HETE, 15(R)-HETE, and 15-HpETE activate to varying degrees PPAR alpha, beta/delta, and gamma. In addition,PPARγ was reported to be involved in cancer pathogenesis and growth.[14][15]PPARγ activation by agonist RS5444 may inhibit anaplastic thyroid cancer growth.[16] See[17] for a review and critique of the roles of PPAR gamma in cancer.

Genetics

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The three main forms of PPAR are transcribed from differentgenes:

Hereditary disorders of all 3 of these PPARs have been described, generally leading to a loss in function and concomitantlipodystrophy,insulin resistance, and/oracanthosis nigricans.[18] OfPPARγ, a gain-of-functionmutation has been described and studied:Pro12Ala, which decreases the risk ofinsulin resistance. It is quite prevalent, with anallele frequency of 0.03 - 0.12 in some populations.[19] In contrast,pro115gln is associated withobesity. Certain otherpolymorphisms in PPAR show a high incidence in populations with elevatedbody mass indexes.

Structure

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Like other nuclear receptors, PPARs are modular in structure and contain the followingfunctional domains:

The DBD contains twozinc finger motifs, which bind to specific sequences of DNA known ashormone response elements when the receptor is activated.

The LBD has an extensivesecondary structure consisting of 13alpha helices and abeta sheet.[20] Both natural and synthetic ligands can bind to the LBD, eitheractivating orrepressing the receptor's activity.

Pharmacology and PPAR modulators

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Main article:PPAR modulator

PPARα and PPARγ are the molecular targets of a number of marketeddrugs.

For instance thehypolipidemicfibrates activate PPARα.[citation needed]

Theanti diabeticthiazolidinediones activate PPARγ.[citation needed]

The synthetic chemicalperfluorooctanoic acid activates PPARα whileperfluorononanoic acid activates both PPARα and PPARγ.[citation needed]

Berberine inactivates PPARγ.[21]

Other natural compounds from different chemical classes activate or inactivate PPARγ.[22][23][24]

See also

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References

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  1. ^Michalik L, Auwerx J, Berger JP, Chatterjee VK, Glass CK, Gonzalez FJ, Grimaldi PA, Kadowaki T, Lazar MA, O'Rahilly S, Palmer CN, Plutzky J, Reddy JK, Spiegelman BM, Staels B, Wahli W (2006). "International Union of Pharmacology. LXI. Peroxisome proliferator-activated receptors".Pharmacol. Rev.58 (4):726–41.doi:10.1124/pr.58.4.5.PMID 17132851.S2CID 2240461.
  2. ^Dunning, Kylie R.; Anastasi, Marie R.; Zhang, Voueleng J.; Russell, Darryl L.; Robker, Rebecca L. (2014-02-05)."Regulation of Fatty Acid Oxidation in Mouse Cumulus-Oocyte Complexes during Maturation and Modulation by PPAR Agonists".PLOS ONE.9 (2) e87327.Bibcode:2014PLoSO...987327D.doi:10.1371/journal.pone.0087327.ISSN 1932-6203.PMC 3914821.PMID 24505284.
  3. ^Belfiore A, Genua M, Malaguarnera R (2009)."PPAR-gamma Agonists and Their Effects on IGF-I Receptor Signaling: Implications for Cancer".PPAR Res.2009 830501.doi:10.1155/2009/830501.PMC 2709717.PMID 19609453.
  4. ^abBerger J, Moller DE (2002). "The mechanisms of action of PPARs".Annu. Rev. Med.53:409–35.doi:10.1146/annurev.med.53.082901.104018.PMID 11818483.
  5. ^Feige JN, Gelman L, Michalik L, Desvergne B, Wahli W (2006). "From molecular action to physiological outputs: peroxisome proliferator-activated receptors are nuclear receptors at the crossroads of key cellular functions".Prog. Lipid Res.45 (2):120–59.doi:10.1016/j.plipres.2005.12.002.PMID 16476485.
  6. ^Tyagi S, Gupta P, Saini AS, Kaushal C, Sharma S (October 2011)."The peroxisome proliferator-activated receptor: A family of nuclear receptors role in various diseases".J Adv Pharm Technol Res.2 (4):236–40.doi:10.4103/2231-4040.90879.PMC 3255347.PMID 22247890.
  7. ^Dreyer C, Krey G, Keller H, Givel F, Helftenbein G, Wahli W (1992). "Control of the peroxisomal beta-oxidation pathway by a novel family of nuclear hormone receptors".Cell.68 (5):879–87.doi:10.1016/0092-8674(92)90031-7.PMID 1312391.S2CID 3148132.
  8. ^Issemann I, Green S (1990). "Activation of a member of the steroid hormone receptor superfamily by peroxisome proliferators".Nature.347 (6294):645–50.Bibcode:1990Natur.347..645I.doi:10.1038/347645a0.PMID 2129546.S2CID 4306126.
  9. ^Schmidt A, Endo N, Rutledge SJ, Vogel R, Shinar D, Rodan GA (1992)."Identification of a new member of the steroid hormone receptor superfamily that is activated by a peroxisome proliferator and fatty acids".Mol. Endocrinol.6 (10):1634–41.doi:10.1210/mend.6.10.1333051.PMID 1333051.S2CID 23506853.
  10. ^Corton JC, Peters JM, Klaunig JE (2018)."The PPARα-dependent rodent liver tumor response is not relevant to humans: addressing misconceptions".Journal of Molecular Endocrinology.92 (1):83–119.Bibcode:2018ArTox..92...83C.doi:10.1007/s00204-017-2094-7.PMC 6092738.PMID 29197930.
  11. ^Sugden MC, Caton PW, Holness MJ, Miller JJ (2021)."Peroxisome Proliferator-Activated Receptors".Reference Module in Life Sciences. Vol. 17. Elsevier. pp. 574–583.doi:10.1016/B978-0-12-819460-7.00200-0.ISBN 978-0-12-809633-8.S2CID 241510571.
  12. ^Yu S, Reddy JK (2007). "Transcription coactivators for peroxisome proliferator-activated receptors".Biochim. Biophys. Acta.1771 (8):936–51.doi:10.1016/j.bbalip.2007.01.008.PMID 17306620.
  13. ^Biochim. Biophys. Acta 1736:228–236, 2005
  14. ^Ezzeddini R, Taghikhani M, Salek Farrokhi A, Somi MH, Samadi N, Esfahani A, Rasaee, MJ (May 2021). "Downregulation of fatty acid oxidation by involvement of HIF-1α and PPARγ in human gastric adenocarcinoma and its related clinical significance".Journal of Physiology and Biochemistry.77 (2):249–260.doi:10.1007/s13105-021-00791-3.PMID 33730333.S2CID 232300877.
  15. ^Mol. Pharmacol. 77-171-184, 2010
  16. ^Marlow LA, Reynolds LA, Cleland AS, Cooper SJ, Gumz ML, Kurakata S, Fujiwara K, Zhang Y, Sebo T, Grant C, McIver B, Wadsworth JT, Radisky DC, Smallridge RC, Copland JA (February 2009)."Reactivation of suppressed RhoB is a critical step for the inhibition of anaplastic thyroid cancer growth".Cancer Res.69 (4):1536–44.doi:10.1158/0008-5472.CAN-08-3718.PMC 2644344.PMID 19208833.
  17. ^Curr. Mol. Med. 7:532–540, 2007
  18. ^Meirhaeghe A, Amouyel P (2004). "Impact of genetic variation of PPARgamma in humans".Mol. Genet. Metab.83 (1–2):93–102.doi:10.1016/j.ymgme.2004.08.014.PMID 15464424.
  19. ^Buzzetti R, Petrone A, Ribaudo MC, Alemanno I, Zavarella S, Mein CA, Maiani F, Tiberti C, Baroni MG, Vecci E, Arca M, Leonetti F, Di Mario U (2004)."The common PPAR-gamma2 Pro12Ala variant is associated with greater insulin sensitivity".European Journal of Human Genetics.12 (12):1050–4.doi:10.1038/sj.ejhg.5201283.PMID 15367918.
  20. ^Zoete V, Grosdidier A, Michielin O (2007). "Peroxisome proliferator-activated receptor structures: ligand specificity, molecular switch and interactions with regulators".Biochim. Biophys. Acta.1771 (8):915–25.doi:10.1016/j.bbalip.2007.01.007.PMID 17317294.
  21. ^Huang C, Zhang Y, Gong Z, Sheng X, Li Z, Zhang W, Qin Y (2006). "Berberine inhibits 3T3-L1 adipocyte differentiation through the PPARgamma pathway".Biochemical and Biophysical Research Communications.348 (2):571–578.doi:10.1016/j.bbrc.2006.07.095.PMID 16890192.
  22. ^Atanasov AG, Wang JN, Gu SP, Bu J, Kramer MP, Baumgartner L, Fakhrudin N, Ladurner A, Malainer C, Vuorinen A, Noha SM, Schwaiger S, Rollinger JM, Schuster D, Stuppner H, Dirsch VM, Heiss EH (2013)."Honokiol: a non-adipogenic PPARγ agonist from nature".Biochim. Biophys. Acta.1830 (10):4813–9.doi:10.1016/j.bbagen.2013.06.021.PMC 3790966.PMID 23811337.
  23. ^Atanasov AG, Blunder M, Fakhrudin N, Liu X, Noha SM, Malainer C, Kramer MP, Cocic A, Kunert O, Schinkovitz A, Heiss EH, Schuster D, Dirsch VM, Bauer R (2013)."Polyacetylenes from Notopterygium incisum--new selective partial agonists of peroxisome proliferator-activated receptor-gamma".PLOS ONE.8 (4) e61755.Bibcode:2013PLoSO...861755A.doi:10.1371/journal.pone.0061755.PMC 3632601.PMID 23630612.
  24. ^Ammazzalorso, Alessandra; Amoroso, Rosa (2019-02-28)."Inhibition of PPARγ by Natural Compounds as a Promising Strategy in Obesity and Diabetes".The Open Medicinal Chemistry Journal.13 (1):7–15.doi:10.2174/1874104501913010007.

External links

[edit]
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
PPARTooltip Peroxisome proliferator-activated receptormodulators
PPARαTooltip Peroxisome proliferator-activated receptor alpha
PPARδTooltip Peroxisome proliferator-activated receptor delta
PPARγTooltip Peroxisome proliferator-activated receptor gamma
Non-selective
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