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Palladin

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
For other uses, seePaladin (disambiguation) andPalladin (surname).
PALLD
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2DM2,2DM3

Identifiers
AliasesPALLD, CGI-151, CGI151, MYN, PNCA1, SIH002, palladin, cytoskeletal associated protein
External IDsOMIM:608092;MGI:1919583;HomoloGene:75052;GeneCards:PALLD;OMA:PALLD - orthologs
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for PALLD
Genomic location for PALLD
Band4q32.3Start168,497,052bp[1]
End168,928,457bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for PALLD
Genomic location for PALLD
Band8|8 B3.1Start61,964,467bp[2]
End62,355,724bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • saphenous vein

  • right ventricle

  • tail of epididymis

  • hair follicle

  • visceral pleura

  • seminal vesicula

  • myometrium

  • right coronary artery

  • popliteal artery

  • tibial arteries
Top expressed in
  • umbilical cord

  • atrium

  • atrioventricular valve

  • interventricular septum

  • endocardial cushion

  • left lung lobe

  • ventricle of the heart

  • uterus

  • gastrula

  • left ventricle
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

23022

72333

Ensembl

ENSG00000129116

ENSMUSG00000058056

UniProt

Q8WX93

Q9ET54

RefSeq (mRNA)
NM_001166108
NM_001166109
NM_001166110
NM_016081
NM_001367567

NM_001367568
NM_001367569
NM_001367570

NM_001081390
NM_001293772
NM_001293773
NM_001293774

RefSeq (protein)
NP_001159580
NP_001159581
NP_001159582
NP_057165
NP_001354496

NP_001354497
NP_001354498
NP_001354499

NP_001074859
NP_001280701
NP_001280702
NP_001280703

Location (UCSC)Chr 4: 168.5 – 168.93 MbChr 8: 61.96 – 62.36 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Palladin is aprotein that in humans is encoded by thePALLDgene.[5][6][7][8] Palladin is a component ofactin-containing microfilaments that control cell shape,adhesion, and contraction.[8]

Discovery

[edit]

Palladin was characterised independently by two research groups, first in the lab of Carol Otey (in 2000)[6] and then in the lab of Olli Carpén (in 2001).[9] It is a part of the myotilin-myopalladin-palladin family and may play an important role in modulating theactincytoskeleton.[10] Palladin, in contrast tomyotilin andmyopalladin, which are expressed only instriated muscle, is expressed ubiquitously in cells ofmesenchymal origin.

Palladin was named after the Italian Renaissance architectAndrea Palladio, reflecting its localization to architectural elements of the cell.[6]

The eukaryotic cytoskeleton. Palladin is one component of this complex cellular machinery.

Isoforms

[edit]

In humans, it appears that seven different isoforms exist, some of which arise throughalternative splicing.[11] In mice, three major isoforms of palladin arise from a single gene. These isoforms contain between three and five copies (depending on the isoform) of an Ig-like domain and between one and two copies of a polyproline domain.[6]

Function

[edit]

Palladin's precise biological role is poorly understood, but it has been shown to play a role in cytoskeletal organization, embryonic development, cell motility, scar formation in the skin, and nerve cell development.[10]

Disease linkage

[edit]

Recently, it has been demonstrated that palladinRNA is overexpressed in patients withpancreaticneoplasia, and that palladin is both overexpressed and mutated in an inherited form ofpancreatic cancer.[12] The palladin mutation identified in familial pancreatic cancer may be unique to a single North American family, as this same mutation has not been found in any other European or North American populations, respectively, in two other genetic studies.[13][14]

Further, Salaria et al. have shown that palladin is overexpressed in the non-neoplastic stroma of pancreatic cancer, but only rarely in the cancer cells per se,[15] suggesting that palladin's role in this disease may involve changes in the tumor microenvironment. More research is clearly required before this protein and its role in neoplasia can be fully understood.

Disease-causing mutations have also been identified in the two other members of this gene family.Myotilin mutations cause a form of limb-girdle muscular dystrophy, and mutations inmyopalladin cause an inherited form of heart disease (dilated cardiomyopathy).

Interactions

[edit]

PALLD has been shown tointeract withEZR.[9]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000129116Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000058056Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Nagase T, Ishikawa K, Suyama M, Kikuno R, Hirosawa M, Miyajima N, Tanaka A, Kotani H, Nomura N, Ohara O (Jul 1999)."Prediction of the coding sequences of unidentified human genes. XIII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro".DNA Res.6 (1):63–70.doi:10.1093/dnares/6.1.63.PMID 10231032.
  6. ^abcdParast MM, Otey CA (Sep 2000)."Characterization of Palladin, a Novel Protein Localized to Stress Fibers and Cell Adhesions".J Cell Biol.150 (3):643–56.doi:10.1083/jcb.150.3.643.PMC 2175193.PMID 10931874.
  7. ^Wiemann S, Weil B, Wellenreuther R, Gassenhuber J, Glassl S, Ansorge W, Böcher M, Blöcker H, Bauersachs S, Blum H, Lauber J, Düsterhöft A, Beyer A, Köhrer K, Strack N, Mewes HW, Ottenwälder B, Obermaier B, Tampe J, Heubner D, Wambutt R, Korn B, Klein M, Poustka A (2001)."Toward a Catalog of Human Genes and Proteins: Sequencing and Analysis of 500 Novel Complete Protein Coding Human cDNAs".Genome Res.11 (3):422–35.doi:10.1101/gr.GR1547R.PMC 311072.PMID 11230166.
  8. ^ab"Entrez Gene: PALLD palladin, cytoskeletal associated protein". nih.gov.
  9. ^abMykkänen OM, Grönholm M, Rönty M, Lalowski M, Salmikangas P, Suila H, Carpén O (2001)."Characterization of Human Palladin, a Microfilament-associated Protein".Mol. Biol. Cell.12 (10):3060–73.doi:10.1091/mbc.12.10.3060.PMC 60155.PMID 11598191.
  10. ^abOtey CA, Rachlin A, Moza M, Arneman D, Carpen O (2005).The palladin/myotilin/myopalladin family of actin-associated scaffolds. International Review of Cytology. Vol. 246. pp. 31–58.doi:10.1016/S0074-7696(05)46002-7.ISBN 9780123646507.PMID 16164966.{{cite book}}:|journal= ignored (help)
  11. ^Rachlin AS, Otey CA (2006)."Identification of palladin isoforms and characterization of an isoform-specific interaction between Lasp-1 and palladin".J. Cell Sci.119 (Pt 6):995–1004.doi:10.1242/jcs.02825.PMID 16492705.
  12. ^Pogue-Geile KL, Chen R, Bronner MP, Crnogorac-Jurcevic T, Moyes KW, Dowen S, Otey CA, Crispin DA, George RD, Whitcomb DC, Brentnall TA (2006)."Palladin Mutation Causes Familial Pancreatic Cancer and Suggests a New Cancer Mechanism".PLOS Med.3 (12): e516.doi:10.1371/journal.pmed.0030516.PMC 1751121.PMID 17194196.
  13. ^Slater E, Amrillaeva V, Fendrich V, Bartsch D, Earl J, Vitone LJ, Neoptolemos JP, Greenhalf W (2007)."Palladin Mutation Causes Familial Pancreatic Cancer: Absence in European Families".PLOS Med.4 (4): e164.doi:10.1371/journal.pmed.0040164.PMC 1855695.PMID 17455999.
  14. ^Zogopoulos G, Rothenmund H, Eppel A, Ash C, Akbari MR, Hedley D, Narod SA, Gallinger S (2007). "The P239S palladin variant does not account for a significant fraction of hereditary or early onset pancreas cancer".Hum. Genet.121 (5):635–7.doi:10.1007/s00439-007-0361-z.PMID 17415588.S2CID 2445261.
  15. ^Salaria SN, Illei P, Sharma R, Walter KM, Klein AP, Eshleman JR, Maitra A, Schulick R, Winter J, Ouellette MM, Goggins M, Hruban R (2007)."Palladin is Overexpressed in the Non-Neoplastic Stroma of Infiltrating Ductal Adenocarcinomas of the Pancreas, but is only Rarely Overexpressed in Neoplastic Cells".Cancer Biol. Ther.6 (3):324–8.doi:10.4161/cbt.6.3.3904.PMC 3144721.PMID 17404500.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 2dm2: Solution structure of the first ig domain of human palladin
    2dm2: Solution structure of the first ig domain of human palladin
  • 2dm3: Solution structure of the second ig domain of human palladin
    2dm3: Solution structure of the second ig domain of human palladin
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