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PTPRC

From Wikipedia, the free encyclopedia
Mammalian protein found in Homo sapiens
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PTPRC
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1YGU,1YGR,5FMV,5FN6,5FN7

Identifiers
AliasesPTPRC, B220, CD45, CD45R, GP180, L-CA, LCA, LY5, T200, protein tyrosine phosphatase, receptor type C, protein tyrosine phosphatase receptor type C
External IDsOMIM:151460;MGI:97810;HomoloGene:2126;GeneCards:PTPRC;OMA:PTPRC - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for PTPRC
Genomic location for PTPRC
Band1q31.3-q32.1Start198,638,457bp[1]
End198,757,476bp[1]
Gene location (Mouse)
Chromosome 1 (mouse)
Chr.Chromosome 1 (mouse)[2]
Chromosome 1 (mouse)
Genomic location for PTPRC
Genomic location for PTPRC
Band1 E4|1 60.73 cMStart137,990,599bp[2]
End138,103,446bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • monocyte

  • appendix

  • blood

  • epithelium of nasopharynx

  • granulocyte

  • lymph node

  • bone marrow

  • bone marrow cell

  • thymus

  • spleen
Top expressed in
  • granulocyte

  • spleen

  • thymus

  • tibiofemoral joint

  • stroma of bone marrow

  • submandibular gland

  • blood

  • right lung

  • Paneth cell

  • mesenteric lymph nodes
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5788

19264

Ensembl

ENSG00000081237
ENSG00000262418

ENSMUSG00000026395

UniProt

P08575

P06800

RefSeq (mRNA)

NM_001267798
NM_002838
NM_080921
NM_080922

NM_001111316
NM_001268286
NM_011210

RefSeq (protein)

NP_001254727
NP_002829
NP_563578
NP_563578.2
NP_002829.3

NP_001104786
NP_001255215
NP_035340

Location (UCSC)Chr 1: 198.64 – 198.76 MbChr 1: 137.99 – 138.1 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Protein tyrosine phosphatase, receptor type, C also known asPTPRC is anenzyme that, in humans, is encoded by thePTPRCgene.[5] PTPRC is also known asCD45antigen (CD stands forcluster of differentiation), which was originally calledleukocyte common antigen (LCA).[6]

PTPRC is a critical enzyme involved in regulating immune cell function. PTPRC is a transmembrane protein tyrosine phosphatase expressed on the surface of all nucleatedhematopoietic cells, particularlylymphocytes. It plays a key role in the activation and differentiation ofT cells,B cells, and other immune cells by modulating signaling pathways. It functions by dephosphorylating specific tyrosine residues on target proteins, thereby controlling various signaling processes essential forimmune response andhomeostasis.[7][8]

Function

[edit]

The protein product of this gene, best known as CD45, is a member of theprotein tyrosine phosphatase (PTP) family. PTPs are signaling molecules that regulate a variety of cellular processes including cell growth, differentiation,mitotic cycle, andoncogenic transformation. CD45 contains an extracellular domain, a single transmembrane segment, and two tandem intracytoplasmiccatalytic domains, and thus belongs to thereceptor type PTP family.[citation needed]

CD45 is atype I transmembrane protein that is present in various isoforms on all differentiatedhematopoietic cells (excepterythrocytes andplasma cells).[9] CD45 has been shown to be an essential regulator ofT- andB-cell antigen receptor signalling. It functions through either direct interaction with components of the antigen receptor complexes via its extracellular domain (a form ofco-stimulation), or by activating variousSrc family kinases required for the antigen receptor signaling via its cytoplasmic domain. CD45 also suppressesJAK kinases, and so functions as a negative regulator ofcytokine receptor signaling.[citation needed]

Many alternatively spliced transcripts variants of this gene, which encode distinct isoforms, have been reported.[6]Antibodies against the different isoforms of CD45 are used in routineimmunohistochemistry to differentiate between immune cell types, as well as to differentiate betweenhistological sections fromlymphomas andcarcinomas.[10]

Isoforms

[edit]

The CD45 protein family consists of multiple members that are all products of a single complex gene. This gene contains 34exons, producing a massive protein with extracellular and cytoplasmic domains that are both unusually large. Exons 4, 5, and 6 (corresponding to protein regions A, B, and C) are alternatively spliced to generate up to eight different protein products featuring combinations of zero, one, two, or all three exons.[11]

CD45's large extracellular domain is highly glycosylated, and these eight isoforms allow wide variation in the structure of its side chains. The isoforms affect the protein'sN-terminal region, which extends linearly out from the cell and bears theO-linked glycan chains.[citation needed]

CD45 isoforms show cell-type and differentiation-stage specific expression, a pattern which is quite well conserved in mammals.[7] These isoforms are often used as markers that identify and distinguish between different types of immune cells.

Naive T lymphocytes are typically positive for CD45RA, which includes only the A protein region. Activated and memory T lymphocytes express CD45RO, the shortest CD45 isoform, which lacks all three of the A, B, and C regions. This shortest isoform facilitates T cell activation.[citation needed]

CD45R (also known as CD45RABC) contains all three possible exons. It is the longest protein and migrates at 200 kDa when isolated from T cells. B cells also express CD45R with heavier glycosylation, bringing the molecular weight to 220 kDa, hence the name B220 (B cell isoform of 220 kDa).

Interactions

[edit]

PTPRC has been shown tointeract with:

CD45 has been recently shown to interact with theHCMV UL11 protein. This interaction results in functional paralysis ofT cells.[19] In addition, CD45 was shown to be the target of the species D adenovirus 19a E3/49K protein to inhibit the activation of NK and T cells.[20]

Clinical importance

[edit]

CD45 is a pan-leukocyte protein with tyrosine phosphatase activity involved in the regulation of signal transduction in hematopoiesis. CD45 does not colocalize withlipid rafts on murine and human non-transformed hematopoietic cells, but CD45 positioning within lipid rafts is modified during their oncogenic transformation toacute myeloid leukemia. CD45 colocalizes with lipid rafts on AML cells, which contributes to elevatedGM-CSF signal intensity involved in proliferation of leukemic cells.[citation needed]

Therapies for blood cancer, including acute myeloid leukemia, have been proposed based on the concept ofgenetically modifying the CD45 of healthy cells, among other cell markers, to be immune to a treatment that kills all normal CD45 cells, including the cancerous ones.[21] Anantibody-drug conjugate exists that kills specifically cells with unaltered CD45, and "shielded" cells with modified CD45 have been developed that evade this.[21]Blood stem cell transplants would be used to replace the original healthy blood cells with modified stem cells, and then the treatment would be applied.[21]

Use as a congenic marker

[edit]

There are two identifiablealleles of CD45 in mice: CD45.1 (Ly5.1 historically) and CD45.2 (Ly5.2 historically).[22] These two types of CD45 are believed to be functionally identical. As such, they are routinely used in scientific research to allow identification of cells. For instance,leukocytes can be transferred from a CD45.1 donor mouse, into a CD45.2 host mouse, and can be subsequently identified due to their expression of CD45.1. This technique is also routinely used when generatingchimeras. An alternative system is the use ofCD90 (Thy1) alleles, which CD90.1/CD90.2 system is used in the same manner as the CD45.1/CD45.2 system.[citation needed]

In 2016 a new knock-in mouse was generated on theC57BL/6 background to be a perfect congenic strain.[23] This mouse, dubbed the CD45.1STEM mouse, differs from the C57BL/6 strain by a single base pair resulting in a single amino acid change that confers the difference in reactivity by the anti-CD45.1 and anti-CD45.2 antibodies. This strain was designed for competitive bone marrow transplantation assays and demonstrated perfect equivalence, unlike the previous standard, the "SJL" mouse, more formally known as Pep Boy.[24]

References

[edit]
  1. ^abcENSG00000262418 GRCh38: Ensembl release 89: ENSG00000081237, ENSG00000262418Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000026395Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Kaplan R, Morse B, Huebner K, Croce C, Howk R, Ravera M, et al. (September 1990)."Cloning of three human tyrosine phosphatases reveals a multigene family of receptor-linked protein-tyrosine-phosphatases expressed in brain".Proceedings of the National Academy of Sciences of the United States of America.87 (18):7000–7004.Bibcode:1990PNAS...87.7000K.doi:10.1073/pnas.87.18.7000.PMC 54670.PMID 2169617.
  6. ^ab"Entrez Gene: PTPRC protein tyrosine phosphatase, receptor type, C".
  7. ^abHermiston ML, Xu Z, Weiss A (2003). "CD45: a critical regulator of signaling thresholds in immune cells".Annual Review of Immunology.21:107–137.doi:10.1146/annurev.immunol.21.120601.140946.PMID 12414720.
  8. ^Thomas ML (1989). "The leukocyte common antigen family".Annual Review of Immunology.7:339–69.doi:10.1146/annurev.iy.07.040189.002011.PMID 2523715.
  9. ^Holmes N (February 2006)."CD45: all is not yet crystal clear".Immunology.117 (2):145–155.doi:10.1111/j.1365-2567.2005.02265.x.PMC 1782222.PMID 16423050.
  10. ^Leong AS, Cooper K, Leong FJ (2003).Manual of Diagnostic Cytology (2nd ed.). Greenwich Medical Media, Ltd. pp. 121–124.ISBN 1-84110-100-1.
  11. ^"Mini-review: CD45 characterization and Isoforms". Bio-Rad Laboratories, Inc.
  12. ^Arendt CW, Ostergaard HL (May 1997)."Identification of the CD45-associated 116-kDa and 80-kDa proteins as the alpha- and beta-subunits of alpha-glucosidase II".The Journal of Biological Chemistry.272 (20):13117–13125.doi:10.1074/jbc.272.20.13117.PMID 9148925.
  13. ^Baldwin TA, Gogela-Spehar M, Ostergaard HL (October 2000)."Specific isoforms of the resident endoplasmic reticulum protein glucosidase II associate with the CD45 protein-tyrosine phosphatase via a lectin-like interaction".The Journal of Biological Chemistry.275 (41):32071–32076.doi:10.1074/jbc.M003088200.PMID 10921916.
  14. ^Baldwin TA, Ostergaard HL (October 2001)."Developmentally regulated changes in glucosidase II association with, and carbohydrate content of, the protein tyrosine phosphatase CD45".Journal of Immunology.167 (7):3829–3835.doi:10.4049/jimmunol.167.7.3829.PMID 11564800.
  15. ^Brown VK, Ogle EW, Burkhardt AL, Rowley RB, Bolen JB, Justement LB (June 1994)."Multiple components of the B cell antigen receptor complex associate with the protein tyrosine phosphatase, CD45".The Journal of Biological Chemistry.269 (25):17238–17244.doi:10.1016/S0021-9258(17)32545-0.PMID 7516335.
  16. ^Koretzky GA, Kohmetscher M, Ross S (April 1993)."CD45-associated kinase activity requires lck but not T cell receptor expression in the Jurkat T cell line".The Journal of Biological Chemistry.268 (12):8958–8964.doi:10.1016/S0021-9258(18)52965-3.PMID 8473339.
  17. ^Ng DH, Watts JD, Aebersold R, Johnson P (January 1996)."Demonstration of a direct interaction between p56lck and the cytoplasmic domain of CD45 in vitro".The Journal of Biological Chemistry.271 (3):1295–1300.doi:10.1074/jbc.271.3.1295.PMID 8576115.
  18. ^Wu L, Fu J, Shen SH (April 2002)."SKAP55 coupled with CD45 positively regulates T-cell receptor-mediated gene transcription".Molecular and Cellular Biology.22 (8):2673–2686.doi:10.1128/mcb.22.8.2673-2686.2002.PMC 133720.PMID 11909961.
  19. ^Gabaev I, Steinbrück L, Pokoyski C, Pich A, Stanton RJ, Schwinzer R, et al. (December 2011)."The human cytomegalovirus UL11 protein interacts with the receptor tyrosine phosphatase CD45, resulting in functional paralysis of T cells".PLOS Pathogens.7 (12) e1002432.doi:10.1371/journal.ppat.1002432.PMC 3234252.PMID 22174689.
  20. ^Windheim M, Southcombe JH, Kremmer E, Chaplin L, Urlaub D, Falk CS, et al. (December 2013)."A unique secreted adenovirus E3 protein binds to the leukocyte common antigen CD45 and modulates leukocyte functions".Proceedings of the National Academy of Sciences of the United States of America.110 (50):E4884 –E4893.Bibcode:2013PNAS..110E4884W.doi:10.1073/pnas.1312420110.PMC 3864294.PMID 24218549.
  21. ^abcMole B (2024-07-15)."Genetic cloaking of healthy cells opens door to universal blood cancer therapy".Ars Technica. Retrieved2024-07-15.
  22. ^Mobraaten LE (1994)."JAX NOTES: Ly5 Gene Nomenclature, C57BL/6J and SJL/J - A History of Change". The Jackson Laboratory. Archived fromthe original on 2015-01-08. Retrieved2015-01-08.
  23. ^Mercier FE, Sykes DB, Scadden DT (June 2016)."Single Targeted Exon Mutation Creates a True Congenic Mouse for Competitive Hematopoietic Stem Cell Transplantation: The C57BL/6-CD45.1(STEM) Mouse".Stem Cell Reports.6 (6):985–992.doi:10.1016/j.stemcr.2016.04.010.PMC 4911492.PMID 27185283.
  24. ^"002014 - B6.SJL-Ptprc Pepc/BoyJ".www.jax.org. Retrieved2020-10-11.

Bibliography

[edit]
  • Tchilian EZ, Beverley PC (2002). "CD45 in memory and disease".Archivum Immunologiae et Therapiae Experimentalis.50 (2):85–93.PMID 12022705.
  • Ishikawa H, Tsuyama N, Abroun S, Liu S, Li FJ, Otsuyama K, et al. (September 2003). "Interleukin-6, CD45 and the src-kinases in myeloma cell proliferation".Leukemia & Lymphoma.44 (9):1477–1481.doi:10.3109/10428190309178767.PMID 14565647.S2CID 19867177.
  • Stanton T, Boxall S, Bennett A, Kaleebu P, Watera C, Whitworth J, et al. (May 2004). "CD45 variant alleles: possibly increased frequency of a novel exon 4 CD45 polymorphism in HIV seropositive Ugandans".Immunogenetics.56 (2):107–110.doi:10.1007/s00251-004-0668-z.PMID 15057492.S2CID 10179258.
  • Huntington ND, Tarlinton DM (July 2004). "CD45: direct and indirect government of immune regulation".Immunology Letters.94 (3):167–174.doi:10.1016/j.imlet.2004.05.011.PMID 15275963.
  • Jameson R (2006)."CD45".Immunology course for undergraduates. Davidson College. Retrieved2011-10-24.

External links

[edit]
  • Overview of all the structural information available in thePDB forUniProt:P08575 (Receptor-type tyrosine-protein phosphatase C) at thePDBe-KB.
PDB gallery
  • 1ygr: Crystal structure of the tandem phosphatase domain of RPTP CD45
    1ygr: Crystal structure of the tandem phosphatase domain of RPTP CD45
  • 1ygu: Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide
    1ygu: Crystal structure of the tandem phosphatase domains of RPTP CD45 with a pTyr peptide
1–50
51–100
101–150
151–200
201–250
251–300
301–350
Class I
Classical PTPs
Receptor type PTPs
Non receptor type PTPs
VH1-like or
dual specific
phosphatases

(DSPs)
MAPK phosphatases (MKPs)
Slingshots
PRLs
CDC14s
Atypical DSPs
Phosphatase and tensin
homologs (PTENs)
Myotubularins
Class II
Class III
Class IV
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