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DNA polymerase iota

From Wikipedia, the free encyclopedia
(Redirected fromPOLI)

Protein-coding gene in the species Homo sapiens
For other uses, seePoli (disambiguation).
POLI
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1T3N,1ZET,2ALZ,2DPI,2DPJ,2FLL,2FLN,2FLP,2KHU,2KHW,2KTF,2L0G,2MBB,3EPG,3EPI,3G6X,3G6Y,3GV5,3GV7,3GV8,3H40,3H4B,3H4D,3NGD,3OSN,3Q8P,3Q8Q,3Q8R,3Q8S,4EBC,4EBD,4EBE,4EYH,4EYI,4FS1,4FS2

Identifiers
AliasesPOLI, RAD30B, RAD3OB, polymerase (DNA) iota, DNA polymerase iota
External IDsOMIM:605252;MGI:1347081;HomoloGene:5209;GeneCards:POLI;OMA:POLI - orthologs
Gene location (Mouse)
Chromosome 18 (mouse)
Chr.Chromosome 18 (mouse)[1]
Chromosome 18 (mouse)
Genomic location for POLI
Genomic location for POLI
Band18 44.48 cM|18 E2Start70,641,751bp[1]
End70,663,691bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
    n/a
Top expressed in
  • seminiferous tubule

  • spermatid

  • zygote

  • spermatocyte

  • blood

  • tail of embryo

  • Pituitary Gland

  • yolk sac

  • spleen

  • secondary oocyte
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

11201

26447

Ensembl

ENSG00000101751

ENSMUSG00000038425

UniProt

Q9UNA4

Q6R3M4

RefSeq (mRNA)

NM_007195

NM_001136090
NM_001289515
NM_001289516
NM_011972

RefSeq (protein)
NP_009126
NP_001338539
NP_001338540
NP_001338541
NP_001338542

NP_001338543
NP_001338544
NP_001338545
NP_001338546
NP_001338547
NP_001338548
NP_001338549
NP_001338550
NP_001338561

NP_001129562
NP_001276444
NP_001276445
NP_036102
NP_001390096

NP_001390097
NP_001390098
NP_001390102
NP_001390103
NP_001390104
NP_001390106
NP_001390108
NP_001390112
NP_001390118

Location (UCSC)n/aChr 18: 70.64 – 70.66 Mb
PubMed search[2][3]
Wikidata
View/Edit HumanView/Edit Mouse

DNA polymerase iota is anenzyme that in humans is encoded by thePOLIgene.[4] It is found in higher eukaryotes, and is believed to have arisen from a gene duplication fromPol η. Pol ι, is aY family polymerase that is involved intranslesion synthesis. It can bypass 6-4 pyrimidine adducts and abasic sites and has a high frequency of wrong base incorporation. Like many other Y family polymerases Pol ι, has low processivity, a large DNA binding pocket and doesn't undergo conformational changes when DNA binds. These attributes are what allow Pol ι to carry out its task as a translesion polymerase. Pol ι only usesHoogsteen base pairing, during DNA synthesis, it will addadenine opposite tothymine in the syn conformation and can add bothcytosine and thymine in the anti conformation acrossguanine, which it flips to the syn conformation.

Xeroderma pigmentosum variant

[edit]

Xeroderma pigmentosum variant (XPV) cells lackDNA polymerase eta (η).[5] Instead these cells use DNA polymerase iota (ι).[5] Exposure of XPV cells to UV light causes a very high frequency and unique spectrum of UV-induced mutations that can ultimately lead to malignant transformation.[5]

References

[edit]
  1. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038425Ensembl, May 2017
  2. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^Frank EG, Woodgate R (Aug 2007)."Increased catalytic activity and altered fidelity of human DNA polymerase iota in the presence of manganese".J Biol Chem.282 (34):24689–96.doi:10.1074/jbc.M702159200.PMID 17609217.
  5. ^abcWang Y, Woodgate R, McManus TP, Mead S, McCormick JJ, Maher VM. Evidence that in xeroderma pigmentosum variant cells, which lack DNA polymerase eta, DNA polymerase iota causes the very high frequency and unique spectrum of UV-induced mutations. Cancer Res. 2007 Apr 1;67(7):3018-26. doi: 10.1158/0008-5472.CAN-06-3073. PMID: 17409408

Further reading

[edit]
PDB gallery
  • 1t3n: Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP
    1t3n: Structure of the catalytic core of DNA polymerase Iota in complex with DNA and dTTP
  • 1zet: X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota
    1zet: X-ray data do not support hoogsteen base-pairing during replication by human polymerase iota
  • 2alz: Ternary Complex of hPoli with DNA and dCTP
    2alz: Ternary Complex of hPoli with DNA and dCTP
  • 2dpi: Ternary complex of hPoli with DNA and dCTP
    2dpi: Ternary complex of hPoli with DNA and dCTP
  • 2dpj: structure of hPoli with DNA and dTTP
    2dpj: structure of hPoli with DNA and dTTP
  • 2fll: Ternary complex of human DNA polymerase iota with DNA and dTTP
    2fll: Ternary complex of human DNA polymerase iota with DNA and dTTP
  • 2fln: binary complex of catalytic core of human DNA polymerase iota with DNA (template A)
    2fln: binary complex of catalytic core of human DNA polymerase iota with DNA (template A)
  • 2flp: Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G)
    2flp: Binary complex of the catalytic core of human DNA polymerase iota with DNA (template G)
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