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PDLIM3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
PDLIM3
Identifiers
AliasesPDLIM3, ALP, PDZ and LIM domain 3
External IDsOMIM:605889;MGI:1859274;HomoloGene:8710;GeneCards:PDLIM3;OMA:PDLIM3 - orthologs
Gene location (Human)
Chromosome 4 (human)
Chr.Chromosome 4 (human)[1]
Chromosome 4 (human)
Genomic location for PDLIM3
Genomic location for PDLIM3
Band4q35.1Start185,500,660bp[1]
End185,535,507bp[1]
Gene location (Mouse)
Chromosome 8 (mouse)
Chr.Chromosome 8 (mouse)[2]
Chromosome 8 (mouse)
Genomic location for PDLIM3
Genomic location for PDLIM3
Band8|8 B1.1Start46,338,498bp[2]
End46,372,585bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • Skeletal muscle tissue of biceps brachii

  • glutes

  • muscle of thigh

  • Skeletal muscle tissue of rectus abdominis

  • triceps brachii muscle

  • gastrocnemius muscle

  • body of tongue

  • right coronary artery

  • thoracic diaphragm

  • ascending aorta
Top expressed in
  • ankle

  • muscle of thigh

  • triceps brachii muscle

  • medial head of gastrocnemius muscle

  • vastus lateralis muscle

  • temporal muscle

  • sternocleidomastoid muscle

  • tibialis anterior muscle

  • ascending aorta

  • aortic valve
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

27295

53318

Ensembl

ENSG00000154553

ENSMUSG00000031636

UniProt

Q53GG5

O70209

RefSeq (mRNA)

NM_001114107
NM_001257962
NM_001257963
NM_014476

NM_016798
NM_001374652

RefSeq (protein)

NP_001107579
NP_001244891
NP_001244892
NP_055291

NP_058078
NP_001361581

Location (UCSC)Chr 4: 185.5 – 185.54 MbChr 8: 46.34 – 46.37 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Actin-associated LIM protein (ALP), also known asPDZ and LIM domain protein 3 is aprotein that in humans is encoded by thePDLIM3gene.[5][6][7] ALP is highly expressed incardiac andskeletal muscle, where it localizes toZ-discs andintercalated discs. ALP functions to enhance the crosslinking ofactin byalpha-actinin-2 and also appears to be essential forright ventricular chamber formation andcontractile function.

Structure

[edit]

ALP exists primarily as two alternatively spliced variants; a 39.2 kDa (364 amino acids)protein inskeletal muscle and a 34.3 kDa (316 amino acids)protein incardiac muscle andsmooth muscle.[8][9][10] ALP has aN-terminal PDZ domain and aC-terminalLIM domain. In addition, the ALP subfamily contains a specific 34amino acid domain named the ALP-like motif, containingprotein kinase C consensus sequences.[11] ThePDZ domain of ALP binds toalpha actinin-2, specifically to its spectrin-like repeats.[12] ThePDZ domain is a motif composed of 80-120 amino acids with conserved four residue GLGF sequences that typically interact withC-termini of cytoskeletal proteins.[13] The region of heterogeneity in the two isoforms is between thePDZ domain andLIM domain.[10] ALP is localized to chromosome 4q35.[12] It has been shown that deletion of muscleblind-like 1 in mice can alter the splicing pattern ofPDLIM3.[14]

Function

[edit]

Studies have shown that ALP is present at the first stage of myofibrilogenesis where it is bound toalpha actinin-2, and this association remains intact in maturemyofibrils where ALP is localized toZ-discs andintercalated discs.Alpha actinin-2 is however not required for targeting ALP toZ-lines.[15] Studies in ALP knockout mice have shown that ALP facilitates the cross-linking ofactin filaments byalpha actinin-2, and absence of ALP induces abnormalright ventricular chamber formation,dysplasia andcardiomyopathy.[16] Further studies usingright ventricularepicardialsystolic strain and geometric remodeling analysis in these animals unveiled that absence of ALP diminishesright ventricular contractile function and alters the pattern ofcardiac hypertrophic remodeling.[17] Two studies using integrative genomic approaches to investigate genetic modifiers of collagen deposition[18] or intrinsic aerobic running capacity (ARC)[19] have mappedPDLIM3 to respectivequantitative trait loci, suggesting that ALP may be involved in molecular networks related to these cardiac phenomena.

Clinical significance

[edit]

Chromosome 4 pericentric inversion has been observed in 10 patients, with associated cardiac defects linked to terminal 4q35.1 deletions, which may affectPDLIM3.[20]

Interactions

[edit]

ALPinteracts with:

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000154553Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000031636Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Bouju S, Piétu G, Le Cunff M, Cros N, Malzac P, Pellissier JF, Pons F, Léger JJ, Auffray C, Dechesne CA (Jan 1999). "Exclusion of muscle specific actinin-associated LIM protein (ALP) gene from 4q35 facioscapulohumeral muscular dystrophy (FSHD) candidate genes".Neuromuscular Disorders.9 (1):3–10.doi:10.1016/S0960-8966(98)00087-X.PMID 10063829.S2CID 24449614.
  6. ^Piétu G, Alibert O, Guichard V, Lamy B, Bois F, Leroy E, Mariage-Sampson R, Houlgatte R, Soularue P, Auffray C (Jun 1996)."Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array".Genome Research.6 (6):492–503.doi:10.1101/gr.6.6.492.PMID 8828038.
  7. ^"Entrez Gene: PDLIM3 PDZ and LIM domain 3".
  8. ^"Protein sequence for human PDZ and LIM domain protein 3 (Uniprot: Q53GG5-2)".Cardiac Organellar Protein Atlas Knowledgebase (COPaKB). Archived fromthe original on 22 June 2015. Retrieved22 June 2015.
  9. ^"Protein sequence for human PDZ and LIM domain protein 3 (Uniprot: Q53GG5)".Cardiac Organellar Protein Atlas Knowledgebase (COPaKB). Archived fromthe original on 22 June 2015. Retrieved22 June 2015.
  10. ^abPomiès P, Macalma T, Beckerle MC (Oct 1999)."Purification and characterization of an alpha-actinin-binding PDZ-LIM protein that is up-regulated during muscle differentiation".The Journal of Biological Chemistry.274 (41):29242–50.doi:10.1074/jbc.274.41.29242.PMID 10506181.
  11. ^Te Velthuis AJ, Isogai T, Gerrits L, Bagowski CP (7 February 2007)."Insights into the molecular evolution of the PDZ/LIM family and identification of a novel conserved protein motif".PLOS ONE.2 (2): e189.Bibcode:2007PLoSO...2..189T.doi:10.1371/journal.pone.0000189.PMC 1781342.PMID 17285143.
  12. ^abcXia H, Winokur ST, Kuo WL, Altherr MR, Bredt DS (Oct 1997)."Actinin-associated LIM protein: identification of a domain interaction between PDZ and spectrin-like repeat motifs".The Journal of Cell Biology.139 (2):507–15.doi:10.1083/jcb.139.2.507.PMC 2139795.PMID 9334352.
  13. ^Ponting CP, Phillips C (Mar 1995). "DHR domains in syntrophins, neuronal NO synthases and other intracellular proteins".Trends in Biochemical Sciences.20 (3):102–3.doi:10.1016/s0968-0004(00)88973-2.PMID 7535955.
  14. ^Dixon DM, Choi J, El-Ghazali A, Park SY, Roos KP, Jordan MC, Fishbein MC, Comai L, Reddy S (12 March 2015)."Loss of muscleblind-like 1 results in cardiac pathology and persistence of embryonic splice isoforms".Scientific Reports.5: 9042.Bibcode:2015NatSR...5E9042D.doi:10.1038/srep09042.PMC 4356957.PMID 25761764.
  15. ^Henderson JR, Pomiès P, Auffray C, Beckerle MC (Mar 2003). "ALP and MLP distribution during myofibrillogenesis in cultured cardiomyocytes".Cell Motility and the Cytoskeleton.54 (3):254–65.doi:10.1002/cm.10102.PMID 12589684.
  16. ^abPashmforoush M, Pomiès P, Peterson KL, Kubalak S, Ross J, Hefti A, Aebi U, Beckerle MC, Chien KR (May 2001). "Adult mice deficient in actinin-associated LIM-domain protein reveal a developmental pathway for right ventricular cardiomyopathy".Nature Medicine.7 (5):591–7.doi:10.1038/87920.PMID 11329061.S2CID 1781328.
  17. ^Lorenzen-Schmidt I, McCulloch AD, Omens JH (Jul 2005)."Deficiency of actinin-associated LIM protein alters regional right ventricular function and hypertrophic remodeling".Annals of Biomedical Engineering.33 (7):888–96.doi:10.1007/s10439-005-3604-y.PMC 4482468.PMID 16060528.
  18. ^Lodder EM, Scicluna BP, Beekman L, Arends D, Moerland PD, Tanck MW, Adriaens ME, Bezzina CR (Dec 2014)."Integrative genomic approach identifies multiple genes involved in cardiac collagen deposition".Circulation: Cardiovascular Genetics.7 (6):790–8.doi:10.1161/CIRCGENETICS.114.000537.PMID 25217174.
  19. ^Lee SJ, Ways JA, Barbato JC, Essig D, Pettee K, DeRaedt SJ, Yang S, Weaver DA, Koch LG, Cicila GT (Sep 2005). "Gene expression profiling of the left ventricles in a rat model of intrinsic aerobic running capacity".Physiological Genomics.23 (1):62–71.CiteSeerX 10.1.1.321.9888.doi:10.1152/physiolgenomics.00251.2004.PMID 16033863.
  20. ^Maurin ML, Labrune P, Brisset S, Le Lorc'h M, Pineau D, Castel C, Romana S, Tachdjian G (Feb 2009). "Molecular cytogenetic characterization of a 4p15.1-pter duplication and a 4q35.1-qter deletion in a recombinant of chromosome 4 pericentric inversion".American Journal of Medical Genetics Part A.149A (2):226–31.doi:10.1002/ajmg.a.32603.PMID 19161154.S2CID 205310317.

Further reading

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´*Brown AK, O'Connor PJ, Roberts TE, Wakefield RJ, Karim Z, Emery P (May 2006)."Ultrasonography for rheumatologists: the development of specific competency based educational outcomes".Annals of the Rheumatic Diseases.65 (5):629–36.doi:10.1136/ard.2005.039974.PMC 1798129.PMID 16192291.

  • Arola AM, Sanchez X, Murphy RT, Hasle E, Li H, Elliott PM, McKenna WJ, Towbin JA, Bowles NE (Apr 2007). "Mutations in PDLIM3 and MYOZ1 encoding myocyte Z line proteins are infrequently found in idiopathic dilated cardiomyopathy".Molecular Genetics and Metabolism.90 (4):435–40.doi:10.1016/j.ymgme.2006.12.008.PMID 17254821.
PDB gallery
  • 1v5l: Solution structure of PDZ domain of mouse Alpha-actinin-2 associated LIM protein
    1v5l: Solution structure of PDZ domain of mouse Alpha-actinin-2 associated LIM protein
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