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PCBD1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
PCBD1
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1DCH,1F93,1DCO,1DCP

Identifiers
AliasesPCBD1, DCOH, PCBD, PCD, PHS, pterin-4 alpha-carbinolamine dehydratase 1
External IDsOMIM:126090;MGI:94873;HomoloGene:57028;GeneCards:PCBD1;OMA:PCBD1 - orthologs
Gene location (Human)
Chromosome 10 (human)
Chr.Chromosome 10 (human)[1]
Chromosome 10 (human)
Genomic location for PCBD1
Genomic location for PCBD1
Band10q22.1Start70,882,280bp[1]
End70,888,565bp[1]
Gene location (Mouse)
Chromosome 10 (mouse)
Chr.Chromosome 10 (mouse)[2]
Chromosome 10 (mouse)
Genomic location for PCBD1
Genomic location for PCBD1
Band10 B4|10 32.14 cMStart60,925,110bp[2]
End60,930,103bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • body of pancreas

  • right adrenal cortex

  • left adrenal gland

  • left adrenal cortex

  • apex of heart

  • mucosa of transverse colon

  • body of stomach

  • right auricle

  • muscle layer of sigmoid colon
Top expressed in
  • right kidney

  • yolk sac

  • proximal tubule

  • left lobe of liver

  • human kidney

  • islet of Langerhans

  • epithelium of stomach

  • lumbar spinal ganglion

  • migratory enteric neural crest cell

  • Ileal epithelium
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5092

13180

Ensembl

ENSG00000166228

ENSMUSG00000020098

UniProt

P61457

P61458

RefSeq (mRNA)

NM_000281
NM_001289797
NM_001323004
NM_001001939

NM_025273

RefSeq (protein)

NP_000272
NP_001276726
NP_001309933

NP_079549

Location (UCSC)Chr 10: 70.88 – 70.89 MbChr 10: 60.93 – 60.93 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Pterin-4-alpha-carbinolamine dehydratase is anenzyme that in humans is encoded by thePCBD1gene.[5][6]

Function

[edit]

This gene encodes pterin-4 alpha-carbinolamine dehydratase, an enzyme involved in phenylalanine hydroxylation. The enzyme regulates the homodimerization of the transcription factor hepatocyte nuclear factor 1 (HNF1).[6]

Clinical significance

[edit]

Mutations of the PCBD1 gene causepterin-4 alpha-carbinolamine dehydratase deficiency, one of the forms oftetrahydrobiopterin deficiency.[7]

Interactions

[edit]

PCBD1 has been shown tointeract withDYRK1B[8] andHNF1A.[9][10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000166228Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020098Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Milatovich A, Mendel DB, Crabtree GR, Francke U (April 1993)."Genes for the dimerization cofactor of hepatocyte nuclear factor-1 alpha (DCOH) are on human and murine chromosomes 10".Genomics.16 (1):292–295.doi:10.1006/geno.1993.1182.PMID 8486378.
  6. ^ab"Entrez Gene: PCBD1 pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1)".
  7. ^Opladen T, López-Laso E, Cortès-Saladelafont E, Pearson TS, Sivri HS, Yildiz Y, et al. (May 2020)."Consensus guideline for the diagnosis and treatment of tetrahydrobiopterin (BH4) deficiencies".Orphanet Journal of Rare Diseases.15 (1): 126.doi:10.1186/s13023-020-01379-8.PMC 7251883.PMID 32456656.
  8. ^Lim S, Jin K, Friedman E (July 2002)."Mirk protein kinase is activated by MKK3 and functions as a transcriptional activator of HNF1alpha".The Journal of Biological Chemistry.277 (28):25040–25046.doi:10.1074/jbc.M203257200.PMID 11980910.
  9. ^Ewing RM, Chu P, Elisma F, Li H, Taylor P, Climie S, et al. (2007)."Large-scale mapping of human protein-protein interactions by mass spectrometry".Molecular Systems Biology.3 (1): 89.doi:10.1038/msb4100134.PMC 1847948.PMID 17353931.
  10. ^Sourdive DJ, Transy C, Garbay S, Yaniv M (April 1997)."The bifunctional DCOH protein binds to HNF1 independently of its 4-alpha-carbinolamine dehydratase activity".Nucleic Acids Research.25 (8):1476–1484.doi:10.1093/nar/25.8.1476.PMC 146627.PMID 9092652.

Further reading

[edit]
PDB gallery
  • 1dch: CRYSTAL STRUCTURE OF DCOH, A BIFUNCTIONAL, PROTEIN-BINDING TRANSCRIPTION COACTIVATOR
    1dch: CRYSTAL STRUCTURE OF DCOH, A BIFUNCTIONAL, PROTEIN-BINDING TRANSCRIPTION COACTIVATOR
  • 1dco: DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR
    1dco: DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR
  • 1dcp: DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR, COMPLEXED WITH BIOPTERIN
    1dcp: DCOH, A BIFUNCTIONAL PROTEIN-BINDING TRANSCRIPTIONAL COACTIVATOR, COMPLEXED WITH BIOPTERIN
  • 1f93: CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE DIMERIZATION DOMAIN OF HNF-1 ALPHA AND THE COACTIVATOR DCOH
    1f93: CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE DIMERIZATION DOMAIN OF HNF-1 ALPHA AND THE COACTIVATOR DCOH
Metabolism ofvitamins, coenzymes, andcofactors
Fat soluble vitamins
Vitamin A
Vitamin E
Vitamin D
Vitamin K
Water soluble vitamins
Thiamine (B1)
Niacin (B3)
Pantothenic acid (B5)
Folic acid (B9)
Vitamin B12
Vitamin C
Riboflavin (B2)
Nonvitamin cofactors
Tetrahydrobiopterin
Molybdopterin
Stub icon

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