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PBX2

From Wikipedia, the free encyclopedia
Protein found in humans
PBX2
Identifiers
AliasesPBX2, G17, HOX12, PBX2MHC, PBX homeobox 2
External IDsOMIM:176311;MGI:1341793;HomoloGene:48115;GeneCards:PBX2;OMA:PBX2 - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for PBX2
Genomic location for PBX2
Band6p21.32Start32,184,733bp[1]
End32,190,202bp[1]
Gene location (Mouse)
Chromosome 17 (mouse)
Chr.Chromosome 17 (mouse)[2]
Chromosome 17 (mouse)
Genomic location for PBX2
Genomic location for PBX2
Band17|17 B1Start34,810,240bp[2]
End34,816,374bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of thyroid gland

  • left lobe of thyroid gland

  • granulocyte

  • right ovary

  • spleen

  • body of uterus

  • pituitary gland

  • left ovary

  • anterior pituitary

  • left uterine tube
Top expressed in
  • genital tubercle

  • tail of embryo

  • granulocyte

  • mandibular prominence

  • maxillary prominence

  • somite

  • saccule

  • germ layer

  • ectoderm

  • otic vesicle
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5089

18515

Ensembl
ENSG00000224952
ENSG00000237344
ENSG00000236353
ENSG00000232005
ENSG00000225987

ENSG00000206315
ENSG00000204304

ENSMUSG00000034673

UniProt

P40425

O35984

RefSeq (mRNA)

NM_002586

NM_017463

RefSeq (protein)

NP_002577

NP_059491

Location (UCSC)Chr 6: 32.18 – 32.19 MbChr 17: 34.81 – 34.82 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Pre-B-cell leukemia transcription factor 2 is aprotein that in humans is encoded by thePBX2gene.[5][6]

Function

[edit]

This gene encodes a ubiquitously expressed member of the TALE/PBX homeobox family. It was identified by its similarity to a homeobox gene which is involved in t(1;19) translocation in acute pre-B-cell leukemias. This protein is a transcriptional activator which binds to the TLX1 promoter. The gene is located within the major histocompatibility complex (MHC) on chromosome 6.[6]

Interactions

[edit]

PBX2 has been shown tointeract withHOXA9.[7]

References

[edit]
  1. ^abcENSG00000237344, ENSG00000236353, ENSG00000232005, ENSG00000225987, ENSG00000206315, ENSG00000204304 GRCh38: Ensembl release 89: ENSG00000224952, ENSG00000237344, ENSG00000236353, ENSG00000232005, ENSG00000225987, ENSG00000206315, ENSG00000204304Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000034673Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Sugaya K, Fukagawa T, Matsumoto K, Mita K, Takahashi E, Ando A, Inoko H, Ikemura T (Sep 1994). "Three genes in the human MHC class III region near the junction with the class II: gene for receptor of advanced glycosylation end products, PBX2 homeobox gene and a notch homolog, human counterpart of mouse mammary tumor gene int-3".Genomics.23 (2):408–19.doi:10.1006/geno.1994.1517.PMID 7835890.
  6. ^ab"Entrez Gene: PBX2 pre-B-cell leukemia homeobox 2".
  7. ^Shen WF, Rozenfeld S, Kwong A, Köm ves LG, Lawrence HJ, Largman C (Apr 1999)."HOXA9 forms triple complexes with PBX2 and MEIS1 in myeloid cells".Molecular and Cellular Biology.19 (4):3051–61.doi:10.1128/mcb.19.4.3051.PMC 84099.PMID 10082572.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 1b72: PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
    1b72: PBX1, HOMEOBOX PROTEIN HOX-B1/DNA TERNARY COMPLEX
  • 1b8i: STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
    1b8i: STRUCTURE OF THE HOMEOTIC UBX/EXD/DNA TERNARY COMPLEX
  • 1du6: SOLUTION STRUCTURE OF THE TRUNCATED PBX HOMEODOMAIN
    1du6: SOLUTION STRUCTURE OF THE TRUNCATED PBX HOMEODOMAIN
  • 1lfu: NMR solution structure of the extended PBX homeodomain bound to DNA
    1lfu: NMR solution structure of the extended PBX homeodomain bound to DNA
  • 1puf: Crystal structure of HoxA9 and Pbx1 homeodomains bound to DNA
    1puf: Crystal structure of HoxA9 and Pbx1 homeodomains bound to DNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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