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PAX5

From Wikipedia, the free encyclopedia

Protein-coding gene in humans
PAX5
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1K78,1MDM

Identifiers
AliasesPAX5, ALL3, BSAP, paired box 5, PAX-5
External IDsOMIM:167414;MGI:97489;HomoloGene:56419;GeneCards:PAX5;OMA:PAX5 - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for PAX5
Genomic location for PAX5
Band9p13.2Start36,833,269bp[1]
End37,034,268bp[1]
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[2]
Chromosome 4 (mouse)
Genomic location for PAX5
Genomic location for PAX5
Band4 B1|4 23.55 cMStart44,524,757bp[2]
End44,710,487bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • buccal mucosa cell

  • epithelium of nasopharynx

  • lymph node

  • appendix

  • bone marrow cell

  • spleen

  • mucosa of ileum

  • granulocyte

  • blood

  • tonsil
Top expressed in
  • spleen

  • mesenteric lymph nodes

  • blood

  • female urethra

  • substantia nigra

  • lumbar subsegment of spinal cord

  • secondary oocyte

  • zygote

  • granulocyte

  • lumbar spinal ganglion
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

5079

18507

Ensembl

ENSG00000196092

ENSMUSG00000014030

UniProt

Q02548

Q02650

RefSeq (mRNA)
NM_001280547
NM_001280548
NM_001280549
NM_001280550
NM_001280551

NM_001280552
NM_001280553
NM_001280554
NM_001280555
NM_001280556
NM_016734

NM_008782

RefSeq (protein)
NP_001267476
NP_001267477
NP_001267478
NP_001267479
NP_001267480

NP_001267481
NP_001267482
NP_001267483
NP_001267484
NP_001267485
NP_057953
NP_001267480.1

NP_032808

Location (UCSC)Chr 9: 36.83 – 37.03 MbChr 4: 44.52 – 44.71 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Paired box protein Pax-5 is aprotein that in humans is encoded by thePAX5gene.[5][6][7]

Function

[edit]

The PAX5 gene is a member of thepaired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conservedDNA-binding domain, known as thepaired box. The PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute toneoplastic transformation. The PAX5 gene encodes theB-cell lineage specific activator protein (BSAP) that is expressed at early, but not late stages of B-cell differentiation. Its expression has also been detected in developing CNS and testis, therefore, PAX5 gene product may not only play an important role in B-cell differentiation, but also in neural development andspermatogenesis.[7]

Clinical significance

[edit]

The PAX5 gene is located in chromosome 9p13 region, which is involved in t(9;14)(p13;q32) translocations recurring in smalllymphocytic lymphomas of theplasmacytoid subtype, and in derived large-cell lymphomas. This translocation brings the potent E-mu enhancer of theIgH gene locus into close proximity of the PAX5 promoters, suggesting that the deregulation of PAX5 gene transcription contributes to thepathogenesis of these lymphomas.[7]

Up to 97% of theReed–Sternberg cells ofHodgkin's lymphoma express Pax-5.[8]

Interactions

[edit]

PAX5 has been shown tointeract withTLE4[9][10] andDeath associated protein 6.[11]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000196092Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000014030Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Adams B, Dörfler P, Aguzzi A, Kozmik Z, Urbánek P, Maurer-Fogy I, Busslinger M (Sep 1992)."Pax-5 encodes the transcription factor BSAP and is expressed in B lymphocytes, the developing CNS, and adult testis".Genes & Development.6 (9):1589–607.doi:10.1101/gad.6.9.1589.PMID 1516825.
  6. ^Pilz AJ, Povey S, Gruss P, Abbott CM (March 1993). "Mapping of the human homologs of the murine paired-box-containing genes".Mammalian Genome.4 (2):78–82.doi:10.1007/BF00290430.PMID 8431641.S2CID 30845070.
  7. ^abc"Entrez Gene: PAX5 paired box gene 5 (B-cell lineage specific activator)".
  8. ^Torlakovic E, Torlakovic G, Nguyen PL, Brunning RD, Delabie J (Oct 2002). "The value of anti-pax-5 immunostaining in routinely fixed and paraffin-embedded sections: a novel pan pre-B and B-cell marker".The American Journal of Surgical Pathology.26 (10):1343–50.doi:10.1097/00000478-200210000-00011.PMID 12360049.S2CID 7703197.
  9. ^Eberhard D, Jiménez G, Heavey B, Busslinger M (May 2000)."Transcriptional repression by Pax5 (BSAP) through interaction with corepressors of the Groucho family".The EMBO Journal.19 (10):2292–303.doi:10.1093/emboj/19.10.2292.PMC 384353.PMID 10811620.
  10. ^Milili M, Gauthier L, Veran J, Mattei MG, Schiff C (Aug 2002)."A new Groucho TLE4 protein may regulate the repressive activity of Pax5 in human B lymphocytes".Immunology.106 (4):447–55.doi:10.1046/j.1365-2567.2002.01456.x.PMC 1782747.PMID 12153506.
  11. ^Emelyanov AV, Kovac CR, Sepulveda MA, Birshtein BK (Mar 2002)."The interaction of Pax5 (BSAP) with Daxx can result in transcriptional activation in B cells".The Journal of Biological Chemistry.277 (13):11156–64.doi:10.1074/jbc.M111763200.PMID 11799127.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.


PDB gallery
  • 1k78: Pax5(1-149)+Ets-1(331-440)+DNA
    1k78: Pax5(1-149)+Ets-1(331-440)+DNA
  • 1mdm: INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND TO DNA
    1mdm: INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND TO DNA
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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