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Omnitrophica

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(Redirected fromOmnitrophota)
Phylum of bacteria
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"Omnitrophota"
Scientific classificationEdit this classification
Domain:Bacteria
Kingdom:incertae sedis
Phylum:"Omnitrophota"
corrig. Rinke et al. 2013
Classes[1]
  • "Omnitrophia"
Synonyms
  • "Omnitrophica"Rinke et al. 2013

"Omnitrophica" or"Omnitrophota" is acandidatephylum ofbacteria[2] withchemolithoautotrophic nutrition. It was previously known as candidate phylumOP3. These bacteria appear to thrive inanoxic environments, such as deep marine sediments, hypersaline environments, freshwater lakes, aquifers, flooded soils, and methanogenic bioreactors.[3] Genomic analyzes have found genes responsible for the construction ofmagnetosomes, which are also present in other phyla of bacteria. These organelles have magnetic properties, which causes bacteria to orient themselves magnetically in the environment.[4] Omnitrophica is part of the "PVC"superphylum along with the phylaPlanctomycetota,Verrucomicrobiota andChlamydiota with which it shares a common ancestor.[5]


Classification

[edit]

The currently accepted taxonomy is based on theList of Prokaryotic names with Standing in Nomenclature (LPSN)[1] andNational Center for Biotechnology Information (NCBI).[6]

This sectionmay be too technical for most readers to understand. Pleasehelp improve it tomake it understandable to non-experts, without removing the technical details.(January 2024) (Learn how and when to remove this message)
See also:Bacterial taxonomy
120 marker proteins basedGTDB 09-RS220[7][8][9]
"Omnitrophia"
"Omnitrophales"
"Omnitrophaceae"

"Ca.Omnitrophus"Rinke et al. 2013

"Abzuiibacteriaceae"

"Ca.Abzuiibacterium"Seymour et al. 2022

"Danuiimicrobiaceae"

"Ca.Danuiimicrobium"Seymour et al. 2022

"Aquincolibacteriaceae"

"Ca.Taenariivivens"Seymour et al. 2022

"Ca.Multiplicimicrobium"Seymour et al. 2022

"Ca.Pegaeibacterium"Seymour et al. 2022

"Ca.Aquincolibacterium"Seymour et al. 2022

"Velamenicoccia"
"Aquiviventales"
"Aquiviventaceae"

"Ca.Aquivivens"Seymour et al. 2022

"Gorgyraeales"
"Gorgyraeaceae"

"Ca.Gorgyraea"Williams et al. 2021 [UBA10183]

"Pluralincolimonadales"
"Pluralincolimonadaceae"

"Ca.Pluralincolimonas"Seymour et al. 2022

JABMRG01
JABMRG01

"Ca.Orphnella"Williams et al. 2021

"Taenaricolales"
"Taenaricolaceae"

"Ca.Taenaricola"Seymour et al. 2022

"Aquitaenarimonadales"
"Aquitaenariimonadaceae"

"Ca.Aquitaenariimonas"Seymour et al. 2022

"Tantalellales"
"Tantalellaceae"

"Ca. Omnitrophus magneticus"Kolinko et al. 2016

"Ca.Aadella"Williams et al. 2021

"Ca.Makaraimicrobium"Seymour et al. 2022

"Ca.Tantalella"Williams et al. 2021

"Kappaeales"
"Kappaeaceae"

"Ca.Kappaea"Williams et al. 2021

"Velesiimonadales"
"Velesiimonadaceae"

"Ca.Velesiimonas"Seymour et al. 2022

"Kaelpiales"
"Kaelpiaceae"

"Ca.Kaelpia"Williams et al. 2021

"Ca.Saelkia"Williams et al. 2021

"Duberdicusellales"
"Duberdicusellaceae"

"Ca.Duberdicusella"Seymour et al. 2022

4484‑171

"Ca.Susuluia"corrig. Williams et al. 2021

"Ghiorseimicrobiales"
"Ghiorseimicrobiaceae"

"Ca.Ghiorseimicrobium"Seymour et al. 2022

"Gygaeellales"
"Gygaeellaceae"

"Ca.Gygaeella"corrig. Williams et al. 2021

"Profunditerraquicolaceae"

"Ca.Sherwoodlollariibacterium"Seymour et al. 2022

"Ca.Profunditerraquicola"Seymour et al. 2022

"Ca.Undivivens"Seymour et al. 2022

"Velamenicoccales"
"Velamenicoccaceae"

"Ca.Phelpsiimicrobium"Seymour et al. 2022

"Ca.Velamenicoccus"Kizina et al. 2022

"Zapsychrales"
"Aceulaceae" (sic)

"Ca.Aceella"corrig. Williams et al. 2021

"Zapsychraceae"

"Ca.Zapsychrus"Williams et al. 2021

"Fredricksoniimonadaceae"

"Ca.Fredricksoniimonas"Seymour et al. 2022

See also

[edit]

References

[edit]
  1. ^abA.C. Parte; et al."Omnitrophota".List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved2025-02-28.
  2. ^Genome database.Omnitrophota
  3. ^Glöckner, Jana, et al. Phylogenetic diversity and metagenomics of candidate division OP3. Environmental microbiology 12.5 (2010): 1218-1229.
  4. ^Kolinko, Sebastian, et al. Single‐cell genomics of uncultivated deep‐branching magnetotactic bacteria reveals a conserved set of magnetosome genes. Environmental microbiology 18.1 (2016): 21-37.
  5. ^Spring, Stefan, et al. Characterization of the first cultured representative of Verrucomicrobia subdivision 5 indicates the proposal of a novel phylum. The ISME journal (2016).
  6. ^C.L. Schoch; et al."Omnitrophota".National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved2025-02-28.
  7. ^"GTDB release 09-RS220".Genome Taxonomy Database. Retrieved10 May 2024.
  8. ^"bac120_r220.sp_labels".Genome Taxonomy Database. Retrieved10 May 2024.
  9. ^"Taxon History".Genome Taxonomy Database. Retrieved10 May 2024.
Portal:
Prokaryotes:Bacteria classification
Candidate Phyla
Radiation
"Synergistetes"
"Thermocalda"
"Cyanoprokaryota"
"Firmicutes"
  • Bacillota
  • Bacillota A
    • "Clostridiia"
    • "Thermoanaerobacteria"
    • Thermosediminibacteria
  • Bacillota D
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    • Sulfobacillia
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    • "Hydrogenisporia"
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    • "Carboxydocellia"
    • "Carboxydothermia"
    • "Dehalobacteriia"
    • Desulfitobacteriia
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    • "Moorellia"
    • Peptococcia
    • Syntrophomonadia
    • Thermincolia
  • "Halanaerobiaeota"
  • "Selenobacteria"
"Sphingobacteria"
"Planctobacteria"
"Proteobacteria"
Incertae sedis
Incertae sedis
GTDB 09-RS220;LTP_10_2024
Omnitrophica
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