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Octamer transcription factor

From Wikipedia, the free encyclopedia
Group of proteins

Octamer transcription factors are afamily oftranscription factors which binds to the "ATTTGCAT"DNA sequence.[1] TheirDNA-binding domain is aPOU domain.

There are eight Octamer proteins in humans (Oct1–11),[2] which have been renamed according to the different classes of POU domain.[3] Octamer-3/4, also known asPOU5F1, is one of theYamanaka factors, which are critical for the maintenance andself-renewal ofembryonic stem cells.[3] On the other hand, Oct-1 and Oct-2 are widely expressed in adult tissues.[3] Oct-7, 8 and 9, also known as "brain factors", are predominantly expressed in thecentral nervous system duringembryonic development.[3] Oct-6 expression is confined to embryonic stem cells and the developing nervous system and skin, while Oct-11 is also involved in skin differentiation.[3]

Human Oct proteins

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See also:Human POU domain proteins

References

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  1. ^Petryniak B, Staudt LM, Postema CE, McCormack WT, Thompson CB (1990)."Characterization of chicken octamer-binding proteins demonstrates that POU domain-containing homeobox transcription factors have been highly conserved during vertebrate evolution".Proc. Natl. Acad. Sci. U.S.A.87 (3):1099–103.Bibcode:1990PNAS...87.1099P.doi:10.1073/pnas.87.3.1099.PMC 53418.PMID 1967834.
  2. ^Oct-5 and Oct-10 are not found in humans, while Oct-3 and Oct-4 were identified as the same protein.
  3. ^abcdeZhao, FQ (1 June 2013)."Octamer-binding transcription factors: genomics and functions".Frontiers in Bioscience (Landmark Edition).18 (3):1051–71.doi:10.2741/4162.PMC 4349413.PMID 23747866.

External links

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(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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