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NRF1

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
Not to be confused withnuclear factor (erythroid-derived 2)-like 1 orNFE2L1.
NRF1
Identifiers
AliasesNRF1, ALPHA-PAL, nuclear respiratory factor 1
External IDsOMIM:600879;MGI:1332235;HomoloGene:3674;GeneCards:NRF1;OMA:NRF1 - orthologs
Gene location (Human)
Chromosome 7 (human)
Chr.Chromosome 7 (human)[1]
Chromosome 7 (human)
Genomic location for NRF1
Genomic location for NRF1
Band7q32.2Start129,611,720bp[1]
End129,757,082bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for NRF1
Genomic location for NRF1
Band6 A3.3|6 12.47 cMStart30,047,987bp[2]
End30,153,457bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • cerebellar hemisphere

  • right hemisphere of cerebellum

  • right uterine tube

  • ventricular zone

  • apex of heart

  • anterior pituitary

  • granulocyte

  • ganglionic eminence

  • sural nerve

  • gastrocnemius muscle
Top expressed in
  • zygote

  • primary oocyte

  • secondary oocyte

  • ventricular zone

  • epiblast

  • Rostral migratory stream

  • Paneth cell

  • granulocyte

  • thymus

  • embryo
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4899

18181

Ensembl

ENSG00000106459

ENSMUSG00000058440

UniProt

Q16656

Q9WU00

RefSeq (mRNA)

NM_005011
NM_001040110
NM_001293163
NM_001293164

NM_001164226
NM_001164227
NM_001164228
NM_001164229
NM_001164230

NM_010938
NM_001361692
NM_001361693
NM_001361694
NM_001361695

RefSeq (protein)

NP_001035199
NP_001280092
NP_001280093
NP_005002

NP_001157698
NP_001157699
NP_001157700
NP_001157701
NP_001157702

NP_035068
NP_001348621
NP_001348622
NP_001348623
NP_001348624

Location (UCSC)Chr 7: 129.61 – 129.76 MbChr 6: 30.05 – 30.15 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Nuclear respiratory factor 1, also known asNrf1,Nrf-1,NRF1 andNRF-1, encodes a protein thathomodimerizes and functions as atranscription factor which activates the expression of some keymetabolic genes regulating cellular growth and nuclear genes required for respiration,heme biosynthesis, andmitochondrial DNA transcription and replication. The protein has also been associated with the regulation ofneurite outgrowth. Alternatetranscriptional splice variants, which encode the same protein, have been characterized. Additional variants encoding different proteinisoforms have been described but they have not been fully characterized. Confusion has occurred in bibliographic databases due to the shared symbol of NRF1 for this gene and for "nuclear factor (erythroid-derived 2)-like 1" which has an official symbol ofNFE2L1.[citation needed]

Function

[edit]

Nrf1 functions as a transcription factor that activates the expression of some key metabolic genes regulatingcellular growth and nuclear genes required for mitochondrial respiration, andmitochondrial DNAtranscription andreplication. Nrf1, together withNrf2, mediates thebiogenomic coordination between nuclear and mitochondrial genomes by directly regulating the expression of several nuclear-encodedETC proteins, and indirectly regulating the three mitochondrial-encodedCOX subunit genes by activatingmtTFA,mtTFB1, andmtTFB2.

Nrf1 is associated with the regulation ofneurite outgrowth.[5]

Alternate transcriptional splice variants, which encode the same protein, have been characterized. Additional variants encoding different protein isoforms have been described but they have not been fully characterized.[6]

Cyclin D1-dependent kinase, through phosphorylating NRF-1 at S47, coordinates nuclear DNA synthesis and mitochondrial function.[7]

Interactions

[edit]

NRF1 has been shown tointeract withDYNLL1,[8]PPARGC1A,[9] andPPRC1.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000106459Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000058440Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Chang WT, Chen HI, Chiou RJ, Chen CY, Huang AM (August 2005). "A novel function of transcription factor alpha-Pal/NRF-1: increasing neurite outgrowth".Biochem. Biophys. Res. Commun.334 (1):199–206.doi:10.1016/j.bbrc.2005.06.079.PMID 15992771.
  6. ^"Entrez Gene: NRF1 nuclear respiratory factor 1".
  7. ^Wang C, Li Z, Lu Y, Du R, Katiyar S, Yang J, Fu M, Leader JE, Quong A, Novikoff PM, Pestell RG (2006)."Cyclin D1 repression of nuclear respiratory factor 1 integrates nuclear DNA synthesis and mitochondrial function".Proceedings of the National Academy of Sciences.103 (31):11567–72.Bibcode:2006PNAS..10311567W.doi:10.1073/pnas.0603363103.JSTOR 30051572.PMC 1518800.PMID 16864783.
  8. ^Herzig RP, Andersson U, Scarpulla RC (December 2000). "Dynein light chain interacts with NRF-1 and EWG, structurally and functionally related transcription factors from humans and drosophila".J. Cell Sci.113 (23):4263–73.doi:10.1242/jcs.113.23.4263.PMID 11069771.
  9. ^Wu Z, Puigserver P, Andersson U, Zhang C, Adelmant G, Mootha V, Troy A, Cinti S, Lowell B, Scarpulla RC, Spiegelman BM (July 1999)."Mechanisms controlling mitochondrial biogenesis and respiration through the thermogenic coactivator PGC-1".Cell.98 (1):115–24.doi:10.1016/S0092-8674(00)80611-X.PMID 10412986.S2CID 16143809.
  10. ^Andersson U, Scarpulla RC (May 2001)."PGC-1-related coactivator, a novel, serum-inducible coactivator of nuclear respiratory factor 1-dependent transcription in mammalian cells".Mol. Cell. Biol.21 (11):3738–49.doi:10.1128/MCB.21.11.3738-3749.2001.PMC 87014.PMID 11340167.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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