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NFYB

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NFYB
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1N1J,4AWL,4CSR

Identifiers
AliasesNFYB, CBF-A, CBF-B, HAP3, NF-YB, nuclear transcription factor Y subunit beta
External IDsOMIM:189904;MGI:97317;HomoloGene:38149;GeneCards:NFYB;OMA:NFYB - orthologs
Gene location (Human)
Chromosome 12 (human)
Chr.Chromosome 12 (human)[1]
Chromosome 12 (human)
Genomic location for NFYB
Genomic location for NFYB
Band12q23.3Start104,117,086bp[1]
End104,138,241bp[1]
Gene location (Mouse)
Chromosome 10 (mouse)
Chr.Chromosome 10 (mouse)[2]
Chromosome 10 (mouse)
Genomic location for NFYB
Genomic location for NFYB
Band10 C1|10 40.25 cMStart82,584,535bp[2]
End82,599,978bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • ganglionic eminence

  • Achilles tendon

  • ventricular zone

  • endothelial cell

  • right coronary artery

  • seminal vesicula

  • left coronary artery

  • tibial arteries

  • Descending thoracic aorta

  • muscle layer of sigmoid colon
Top expressed in
  • primitive streak

  • epiblast

  • ganglionic eminence

  • saccule

  • otic vesicle

  • embryo

  • ventricular zone

  • maxillary prominence

  • Rostral migratory stream

  • Region I of hippocampus proper
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4801

18045

Ensembl

ENSG00000120837

ENSMUSG00000020248

UniProt

P25208

P63139

RefSeq (mRNA)

NM_006166

NM_010914

RefSeq (protein)

NP_006157
NP_006157.1

NP_035044

Location (UCSC)Chr 12: 104.12 – 104.14 MbChr 10: 82.58 – 82.6 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Nuclear transcription factor Y subunit beta is aprotein that in humans is encoded by theNFYBgene.[5][6]

Function

[edit]

The protein encoded by this gene is one subunit of a trimeric complex, forming a highly conserved transcription factor that binds with high specificity to CCAAT motifs in the promoter regions in a variety of genes. This gene product, subunit B, forms a tight dimer with the C subunit, a prerequisite for subunit A association. The resulting trimer binds to DNA with high specificity and affinity. Subunits B and C each contain a histone-like motif. Observation of the histone nature of these subunits is supported by two types of evidence; protein sequence alignments and experiments with mutants.[7]

Interactions

[edit]

NFYB has been shown tointeract with:

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000120837Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000020248Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Li XY, Mattei MG, Zaleska-Rutczynska Z, Hooft van Huijsduijnen R, Figueroa F, Nadeau J, Benoist C, Mathis D (Mar 1992). "One subunit of the transcription factor NF-Y maps close to the major histocompatibility complex in murine and human chromosomes".Genomics.11 (3):630–4.doi:10.1016/0888-7543(91)90070-U.PMID 1774067.
  6. ^Maity SN, de Crombrugghe B (Jun 1998). "Role of the CCAAT-binding protein CBF/NF-Y in transcription".Trends Biochem Sci.23 (5):174–8.doi:10.1016/S0968-0004(98)01201-8.PMID 9612081.
  7. ^"Entrez Gene: NFYB nuclear transcription factor Y, beta".
  8. ^Imbriano C, Bolognese F, Gurtner A, Piaggio G, Mantovani R (Jul 2001)."HSP-CBF is an NF-Y-dependent coactivator of the heat shock promoters CCAAT boxes".J. Biol. Chem.276 (28):26332–9.doi:10.1074/jbc.M101553200.hdl:11380/303761.PMID 11306579.
  9. ^Pise-Masison CA, Dittmer J, Clemens KE, Brady JN (Mar 1997)."Physical and functional interaction between the human T-cell lymphotropic virus type 1 Tax1 protein and the CCAAT binding protein NF-Y".Mol. Cell. Biol.17 (3):1236–43.doi:10.1128/mcb.17.3.1236.PMC 231848.PMID 9032250.
  10. ^Izumi H, Molander C, Penn LZ, Ishisaki A, Kohno K, Funa K (Apr 2001). "Mechanism for the transcriptional repression by c-Myc on PDGF beta-receptor".J. Cell Sci.114 (Pt 8):1533–44.doi:10.1242/jcs.114.8.1533.PMID 11282029.
  11. ^Bellorini M, Lee DK, Dantonel JC, Zemzoumi K, Roeder RG, Tora L, Mantovani R (Jun 1997)."CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues".Nucleic Acids Res.25 (11):2174–81.doi:10.1093/nar/25.11.2174.PMC 146709.PMID 9153318.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1n1j: Crystal structure of the NF-YB/NF-YC histone pair
    1n1j: Crystal structure of the NF-YB/NF-YC histone pair
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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