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NFIB (gene)

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

NFIB
Identifiers
AliasesNFIB, CTF, HMGIC/NF-I/B, NF1-B, NFI-B, NFI-RED, NFIB2, NFIB3, nuclear factor I B, MACID
External IDsOMIM:600728;MGI:103188;HomoloGene:4087;GeneCards:NFIB;OMA:NFIB - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for NFIB
Genomic location for NFIB
Band9p23-p22.3Start14,081,843bp[1]
End14,398,983bp[1]
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[2]
Chromosome 4 (mouse)
Genomic location for NFIB
Genomic location for NFIB
Band4 C3|4 38.4 cMStart82,208,410bp[2]
End82,623,987bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • pericardium

  • epithelium of lactiferous gland

  • lactiferous duct

  • urethra

  • nipple

  • parietal pleura

  • mucosa of paranasal sinus

  • saphenous vein

  • vena cava

  • synovial joint
Top expressed in
  • Rostral migratory stream

  • human fetus

  • ureter

  • pineal gland

  • semi-lunar valve

  • internal carotid artery

  • lactiferous gland

  • condyle

  • parotid gland

  • efferent ductule
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

4781

18028

Ensembl

ENSG00000147862

ENSMUSG00000008575

UniProt

O00712

P97863

RefSeq (mRNA)

NM_001190737
NM_001190738
NM_001282787
NM_005596

NM_001113209
NM_001113210
NM_001286127
NM_001286131
NM_008687

RefSeq (protein)
NP_001177666
NP_001177667
NP_001269716
NP_005587
NP_001356387

NP_001356388
NP_001356389
NP_001356390
NP_001356391
NP_001356392
NP_001356393
NP_001356394
NP_001356395
NP_001356396
NP_001356397
NP_001356398
NP_001356399
NP_001356400
NP_001356401
NP_001356402
NP_001356403
NP_001356404
NP_001356405
NP_001356406
NP_001356407
NP_001356408
NP_001356409
NP_001356410

NP_001106680
NP_001106681
NP_001273056
NP_001273060
NP_032713

Location (UCSC)Chr 9: 14.08 – 14.4 MbChr 4: 82.21 – 82.62 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Nuclear factor 1 B-type is aprotein that in humans is encoded by theNFIBgene.[5][6]

NFIBhaploinsufficiency is also associated with intellectual disability and macrocephaly, as are NFIA and NFIX.[7]

Embryonic development

[edit]

The NFIB gene is a part of the NFI gene complex that includes three other genes (NFIA,NFIC andNFIX).[8][9] The NFIB gene is a protein coding gene that also serves as atranscription factor.[10] This gene is essential in embryonic development and it works together with its gene complex to initiate tissuedifferentiation in the fetus. NFIB has the highest concentrations in the lung,skeletal muscle and heart but is also found in the areas of the developing liver, kidneys and brain.[8]

Through knockout experiments, researchers found that mice without the NFIB gene have severely underdeveloped lungs.[9][11] This mutation does not seem to causespontaneous abortions because in utero the fetus does not use its lungs forrespiration. However, this becomes lethal once the fetus is born and has to take its first breath. It is thought that NFIB plays a role in down regulating the transcription factorsTGF-β1 andShh in normal gestation because they remained high in knockout experiments.[9] The absence of NFIB also leads to insufficient amounts ofsurfactant being produced which is one reason why the mice cannot breathe once it is born.[9] The knockout experiments demonstrated that NFIB has a significant role infore-brain development. NFIB is typically found inpontine nuclei of theCNS, thecerebral cortex and thewhite matter of the brain and without NFIB these areas are dramatically affected.[8][11]

Absence of one copy is associated withmacrocephaly and intellectual disability. This associated was confirmed in mouse models where deletion of one copy resulted in enlargement of the brain while preserving its overall organisation.[12]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000147862Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000008575Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Qian F, Kruse U, Lichter P, Sippel AE (July 1995). "Chromosomal localization of the four genes (NFIA, B, C, and X) for the human transcription factor nuclear factor I by FISH".Genomics.28 (1):66–73.doi:10.1006/geno.1995.1107.PMID 7590749.
  6. ^"Entrez Gene: NFIB nuclear factor I/B".
  7. ^Schanze I, Bunt J, Lim JW, Schanze D, Dean RJ, Alders M, et al. (November 2018)."NFIB Haploinsufficiency Is Associated with Intellectual Disability and Macrocephaly".American Journal of Human Genetics.103 (5):752–768.doi:10.1016/j.ajhg.2018.10.006.PMC 6218805.PMID 30388402.
  8. ^abcChaudhry AZ, Lyons GE, Gronostajski RM (March 1997)."Expression patterns of the four nuclear factor I genes during mouse embryogenesis indicate a potential role in development".Developmental Dynamics.208 (3):313–325.doi:10.1002/(sici)1097-0177(199703)208:3<313::aid-aja3>3.0.co;2-l.PMID 9056636.
  9. ^abcdGründer A, Ebel TT, Mallo M, Schwarzkopf G, Shimizu T, Sippel AE, et al. (March 2002)."Nuclear factor I-B (Nfib) deficient mice have severe lung hypoplasia".Mechanisms of Development.112 (1–2):69–77.doi:10.1016/S0925-4773(01)00640-2.PMID 11850179.S2CID 10396584.
  10. ^Database GH."NFIB Gene - GeneCards | NFIB Protein | NFIB Antibody".www.genecards.org. Retrieved2017-04-09.
  11. ^abSteele-Perkins G, Plachez C, Butz KG, Yang G, Bachurski CJ, Kinsman SL, et al. (January 2005)."The transcription factor gene Nfib is essential for both lung maturation and brain development".Molecular and Cellular Biology.25 (2):685–698.doi:10.1128/MCB.25.2.685-698.2005.PMC 543431.PMID 15632069.
  12. ^Schanze I, Bunt J, Lim JW, Schanze D, Dean RJ, Alders M, et al. (November 2018)."NFIB Haploinsufficiency Is Associated with Intellectual Disability and Macrocephaly".American Journal of Human Genetics.103 (5):752–768.doi:10.1016/j.ajhg.2018.10.006.PMC 6218805.PMID 30388402.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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