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Mevalonate pathway

From Wikipedia, the free encyclopedia
Series of interconnected biochemical reactions
Mevalonate pathway diagram showing the conversion of acetyl-CoA into isopentenyl pyrophosphate, the essential building block of all isoprenoids. The eukaryotic variant is shown in black. Archaeal variants are shown in red and blue.

Themevalonate pathway, also known as theisoprenoid pathway orHMG-CoA reductase pathway is an essentialmetabolic pathway present ineukaryotes,archaea, and somebacteria.[1] The pathway produces two five-carbon building blocks calledisopentenyl pyrophosphate (IPP) anddimethylallyl pyrophosphate (DMAPP), which are used to makeisoprenoids, a diverse class of over 30,000 biomolecules such ascholesterol,vitamin K,coenzyme Q10, and allsteroid hormones.[2]

The mevalonate pathway begins withacetyl-CoA and ends with the production of IPP and DMAPP.[3] It is best known as the target ofstatins, a class of cholesterol lowering drugs. Statins inhibitHMG-CoA reductase within the mevalonate pathway.

Upper mevalonate pathway

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The mevalonate pathway of eukaryotes, archaea, and eubacteria all begin the same way. The sole carbon feed stock of the pathway is acetyl-CoA. The first step condenses twoacetyl-CoA molecules to yieldacetoacetyl-CoA. This is followed by a second condensation to formHMG-CoA (3-hydroxy-3- methyl-glutaryl-CoA). Reduction of HMG-CoA yields (R)-mevalonate. These first 3 enzymatic steps are called the upper mevalonate pathway.[4]

Lower mevalonate pathway

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The lower mevalonate pathway which converts (R)-mevalonate into IPP and DMAPP has 3 variants. Ineukaryotes, mevalonate is phosphorylated twice in the 5-OH position, thendecarboxylated to yield IPP.[4] In somearchaea such asHaloferax volcanii, mevalonate is phosphorylated once in the 5-OH position, decarboxylated to yield isopentenyl phosphate (IP), and finally phosphorylated again to yield IPP (Archaeal Mevalonate Pathway I).[5] A third mevalonate pathway variant found inThermoplasma acidophilum, phosphorylates mevalonate at the 3-OH position followed by phosphorylation at the 5-OH position. The resulting metabolite, mevalonate-3,5-bisphosphate, is decarboxylated to IP, and finally phosphorylated to yield IPP (Archaeal Mevalonate Pathway II).[6][7]

Regulation and feedback

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Several keyenzymes can be activated throughDNA transcriptional regulation on activation ofSREBP (sterol regulatory element-binding protein-1 and -2). This intracellular sensor detects lowcholesterol levels and stimulates endogenous production by the HMG-CoA reductase pathway, as well as increasinglipoprotein uptake by up-regulating theLDL-receptor. Regulation of this pathway is also achieved by controlling the rate of translation of the mRNA, degradation of reductase and phosphorylation.[1]

Pharmacology

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A number ofdrugs target themevalonate pathway:

Diseases

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A number ofdiseases affect themevalonate pathway:

Alternative pathway

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Plants, mostbacteria, and someprotozoa such asmalaria parasites have the ability to produceisoprenoids using an alternative pathway called themethylerythritol phosphate (MEP) ornon-mevalonate pathway.[9] The output of both the mevalonate pathway and the MEP pathway are the same, IPP and DMAPP; however, the enzymatic reactions to convert acetyl-CoA into IPP are entirely different. Interaction between the two metabolic pathways can be studied by using13C-glucoseisotopomers.[10] In higher plants, the MEP pathway operates inplastids while the mevalonate pathway operates in thecytosol.[9] Examples of bacteria that contain the MEP pathway includeEscherichia coli and pathogens such asMycobacterium tuberculosis.

Enzymatic reactions

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EnzymeReactionDescription
Acetoacetyl-CoA thiolase
Acetyl-CoA (citric acid cycle) undergoes condensation with another acetyl-CoA molecule to formacetoacetyl-CoA
HMG-CoA synthase
Acetoacetyl-CoA condenses with another Acetyl-CoA molecule to form3-hydroxy-3-methylglutaryl-CoA (HMG-CoA).
HMG-CoA reductase
HMG-CoA is reduced tomevalonate byNADPH. This is the rate limiting step in cholesterol synthesis, which is why this enzyme is a good target for pharmaceuticals (statins).
mevalonate-5-kinase
Mevalonate is phosphorylated at the 5-OH position to yieldmevalonate-5-phosphate (also calledphosphomevalonic acid).
mevalonate-3-kinase
Mevalonate is phosphorylated at the 3-OH position to yieldmevalonate-3-phosphate. 1 ATP is consumed.
mevalonate-3-phosphate-5-kinase
Mevalonate-3-phosphate is phosphorylated at the 5-OH position to yieldmevalonate-5-phosphate (also calledphosphomevalonic acid). 1 ATP is consumed.
phosphomevalonate kinase
mevalonate-5-phosphate is phosphorylated to yieldmevalonate-5-pyrophosphate. 1 ATP is consumed.
mevalonate-5-pyrophosphate decarboxylase
Mevalonate-5-pyrophosphate is decarboxylated to yieldisopentenyl pyrophosphate (IPP). 1 ATP is consumed.
isopentenyl pyrophosphate isomerase
isopentenyl pyrophosphate isisomerized todimethylallyl pyrophosphate.

References

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  1. ^abBuhaescu I, Izzedine H (2007) Mevalonate pathway: areview of clinical and therapeutical implications. ClinBiochem 40:575–584.
  2. ^Holstein, S. A., and Hohl, R. J. (2004) Isoprenoids: Remarkable Diversity of Form and Function. Lipids 39, 293−309
  3. ^Goldstein, J. L., and Brown, S. B. (1990) Regulation of the mevalonate pathway. Nature 343, 425−430
  4. ^abMiziorko H (2011) Enzymes of the mevalonate pathway of isoprenoid biosynthesis. Arch Biochem Biophys 505:131-143.
  5. ^Dellas, N., Thomas, S. T., Manning, G., and Noel, J. P. (2013) Discovery of a metabolic alternative to the classical mevalonate pathway. eLife 2, e00672
  6. ^Vinokur JM, Korman TP, Cao Z, Bowie JU (2014) Evidence of a novel mevalonate pathway in archaea. Biochemistry 53:4161–4168.
  7. ^Azami Y, Hattori A, Nishimura H, Kawaide H, YoshimuraT, Hemmi H (2014) (R)-mevalonate-3-phosphate is an intermediate of the mevalonate pathway in Thermoplasma acidophilum. J Biol Chem 289:15957–15967.
  8. ^Lewiecki, E. Michael (May 2010)."Bisphosphonates for the treatment of osteoporosis: insights for clinicians".Therapeutic Advances in Chronic Disease.1 (3):115–128.doi:10.1177/2040622310374783.ISSN 2040-6223.PMC 3513863.PMID 23251734.
  9. ^abBanerjee A, Sharkey TD. (2014) Methylerythritol 4-phosphate (MEP) pathway metabolic regulation. Nat Prod Rep 31:10431055
  10. ^Orsi E, Beekwilder J, Peek S, Eggink G, Kengen SW, Weusthuis RA (2020)."Metabolic flux ratio analysis by parallel 13C labeling of isoprenoid biosynthesis inRhodobacter sphaeroides".Metabolic Engineering.57:228–238.doi:10.1016/j.ymben.2019.12.004.PMID 31843486.

External links

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Mevalonate pathway
ToHMG-CoA
Ketogenesis
ToMevalonic acid
ToDMAPP
Geranyl-
Tocholesterol
Tolanosterol
7-Dehydrocholesterol path
Desmosterol path
ToBile acids
Steroidogenesis
Topregnenolone
Tocorticosteroids
Tosex hormones
Toandrogens
Toestrogens
Other/ungrouped
Metro-style map of major metabolic pathways



The image above contains clickable links
Majormetabolic pathways inmetro-style map. Click any text (name of pathway or metabolites) to link to the corresponding article.
Single lines: pathways common to most lifeforms. Double lines: pathways not in humans (occurs in e.g. plants, fungi, prokaryotes). Orange nodes:carbohydrate metabolism. Violet nodes:photosynthesis. Red nodes:cellular respiration. Pink nodes:cell signaling. Blue nodes:amino acid metabolism. Grey nodes:vitamin andcofactor metabolism. Brown nodes:nucleotide andprotein metabolism. Green nodes:lipid metabolism.
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