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Metabolic network

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Set of biological pathways
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Ametabolic network is the complete set of metabolic and physical processes that determine thephysiological andbiochemical properties of acell. As such, these networks comprise the chemical reactions ofmetabolism, themetabolic pathways, as well as the regulatory interactions that guide these reactions.

With the sequencing of completegenomes, it is now possible to reconstruct the network of biochemical reactions in many organisms, from bacteria to human. Several of these networks are available online:Kyoto Encyclopedia of Genes and Genomes (KEGG),[1]EcoCyc,[2]BioCyc[3] and metaTIGER.[4]Metabolic networks are powerful tools for studying and modelling metabolism.


Metro-style map of major metabolic pathways



The image above contains clickable links
Majormetabolic pathways inmetro-style map. Click any text (name of pathway or metabolites) to link to the corresponding article.
Single lines: pathways common to most lifeforms. Double lines: pathways not in humans (occurs in e.g. plants, fungi, prokaryotes). Orange nodes:carbohydrate metabolism. Violet nodes:photosynthesis. Red nodes:cellular respiration. Pink nodes:cell signaling. Blue nodes:amino acid metabolism. Grey nodes:vitamin andcofactor metabolism. Brown nodes:nucleotide andprotein metabolism. Green nodes:lipid metabolism.

Uses

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Metabolic networks can be used to detectcomorbidity patterns in diseased patients.[5] Certain diseases, such asobesity anddiabetes, can be present in the same individual concurrently, sometimes one disease being a significant risk factor for the other disease.[6] The disease phenotypes themselves are normally the consequence of the cell's inability to breakdown or produce an essential substrate. However, an enzyme defect at one reaction may affect the fluxes of other subsequent reactions. These cascading effects couple the metabolic diseases associated with subsequent reactions resulting in comorbidity effects. Thus, metabolic disease networks can be used to determine if two disorders are connected due to their correlated reactions.[5]

See also

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References

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  1. ^"GenomeNet".www.genome.ad.jp. Archived fromthe original on 2009-02-24. Retrieved2020-04-01.
  2. ^"EcoCyc: Encyclopedia of E. coli Genes and Metabolic Pathways".www.ecocyc.org.
  3. ^"BioCyc Pathway/Genome Database Collection".biocyc.org.
  4. ^"metaTIGER - Home".www.bioinformatics.leeds.ac.uk. Archived fromthe original on 2012-03-04. Retrieved2010-06-09.
  5. ^abLee, D.- S.; Park, J.; Kay, K. A.; Christakis, N. A.; Oltvai, Z. N.; Barabasi, A.- L. (2008)."The implications of human metabolic network topology for disease comorbidity".Proceedings of the National Academy of Sciences.105 (29):9880–9885.doi:10.1073/pnas.0802208105.PMC 2481357.PMID 18599447.
  6. ^Ross, R.; Dagnone, D.; Jones, P. J.; Smith, H.; Paddags, A.; Hudson, R.; Janssen, I. (2000)."Reduction in obesity and related comorbid conditions after diet-induced weight loss or exercise-induced weight loss in men. A randomized, controlled trial".Annals of Internal Medicine.133 (2):92–103.doi:10.7326/0003-4819-133-2-200007180-00008.PMID 10896648.S2CID 13415272.
General
Energy
metabolism
Aerobic respiration
Anaerobic respiration
  • Electron acceptors other than oxygen
Fermentation
Specific
paths
Protein metabolism
Amino acid
Nucleotide
metabolism
Carbohydrate metabolism
(carbohydrate catabolism
andanabolism)
Human
Nonhuman
Lipid metabolism
(lipolysis,lipogenesis)
Fatty acid metabolism
Other
Other


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