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MCOLN3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
MCOLN3
Identifiers
AliasesMCOLN3, TRP-ML3, TRPML3, mucolipin 3, mucolipin TRP cation channel 3
External IDsOMIM:607400;MGI:1890500;HomoloGene:10118;GeneCards:MCOLN3;OMA:MCOLN3 - orthologs
Gene location (Human)
Chromosome 1 (human)
Chr.Chromosome 1 (human)[1]
Chromosome 1 (human)
Genomic location for MCOLN3
Genomic location for MCOLN3
Band1p22.3Start85,018,082bp[1]
End85,048,500bp[1]
Gene location (Mouse)
Chromosome 3 (mouse)
Chr.Chromosome 3 (mouse)[2]
Chromosome 3 (mouse)
Genomic location for MCOLN3
Genomic location for MCOLN3
Band3 H2|3 71.03 cMStart145,823,205bp[2]
End145,847,561bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right adrenal cortex

  • left adrenal gland

  • left adrenal cortex

  • corpus epididymis

  • germinal epithelium

  • pituitary gland

  • anterior pituitary

  • skin of thigh

  • body of pancreas

  • skin of hip
Top expressed in
  • vestibular membrane of cochlear duct

  • epithelium of small intestine

  • stria vascularis

  • vestibular sensory epithelium

  • yolk sac

  • utricle

  • iris

  • migratory enteric neural crest cell

  • medullary collecting duct

  • right kidney
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

55283

171166

Ensembl

ENSG00000055732

ENSMUSG00000036853

UniProt

Q8TDD5

Q8R4F0

RefSeq (mRNA)

NM_001253693
NM_018298

NM_134160

RefSeq (protein)

NP_001240622
NP_060768

NP_598921

Location (UCSC)Chr 1: 85.02 – 85.05 MbChr 3: 145.82 – 145.85 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Mucolipin-3 also known asTRPML3 (transient receptor potential cation channel, mucolipin subfamily, member 3) is aprotein that in humans is encoded by theMCOLN3gene.[5] It is a member of the small family of theTRPML channels, a subgroup of the large protein family ofTRP ion channels.[6]

Gene

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In human, theMCOLN3 gene resides on the short arm ofchromosome 1 at 1p22.3. The gene is split in 12exons, which entail theopen reading frame of 1659 nucleotides. The encoded protein, TRPML3, has 553 amino acid with a predicted molecular weight of ≈64kDa. Computational analyses of the secondary structure predict the presence of sixtransmembrane domains, an ion transport motif (PF00520) and atransient receptor potential motif (PS50272).In the mouse,Mcoln3, is located on the distal end ofchromosome 3 at cytogenetic band qH2. Human and mouse TRPML3 proteins share 91% sequence identity.[7]All vertebrate species, for which a genomic sequence is available, harbor theMCOLN3 gene. Homologs ofMCOLN3 are also present in the genome of insects (Drosophila melanogaster), nematodes (Caenorhabditis elegans), sea urchin (Strongylocentrotus purpuratus) and lower organisms including Hydra and Dictyostelium.

Expression

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[icon]
This section is empty. You can help byadding to it.(March 2013)

Function

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TRPML3 is an inwardly-rectifyingcationchannel.[5]

Genetics

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[icon]
This section is empty. You can help byadding to it.(March 2013)

Phenotypes

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Mutations of the MCOLN3 gene in mice result in auditoryhair cell death anddeafness.[8]

Ligands

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Agonists (channel activators)

See also

[edit]
  • transient receptor potential cation channel, mucolipin subfamily, member 1 (MCOLN1)
  • transient receptor potential cation channel, mucolipin subfamily, member 2 (MCOLN2)

References

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  1. ^abcGRCh38: Ensembl release 89: ENSG00000055732Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000036853Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abClapham DE, Julius D, Montell C, Schultz G (December 2005). "International Union of Pharmacology. XLIX. Nomenclature and structure-function relationships of transient receptor potential channels".Pharmacol. Rev.57 (4):427–50.doi:10.1124/pr.57.4.6.PMID 16382100.S2CID 17936350.
  6. ^Noben-Trauth K (January 2011). "Chapter 13: TRPML3". In Islam MS (ed.).Transient Receptor Potential Channels. Advances in Experimental Medicine and Biology. Vol. 704. Berlin: Springer. p. 700.ISBN 978-94-007-0264-6.
  7. ^Noben-Trauth, Konrad (2011). "The TRPML3 Channel: From Gene to Function".Transient Receptor Potential Channels. Advances in Experimental Medicine and Biology. Vol. 704. pp. 229–237.doi:10.1007/978-94-007-0265-3_13.ISBN 978-94-007-0264-6.PMID 21290299.
  8. ^Nagata K, Zheng L, Madathany T, Castiglioni AJ, Bartles JR, García-Añoveros J (January 2008)."The varitint-waddler (Va) deafness mutation in TRPML3 generates constitutive, inward rectifying currents and causes cell degeneration".Proc. Natl. Acad. Sci. U.S.A.105 (1):353–8.Bibcode:2008PNAS..105..353N.doi:10.1073/pnas.0707963105.PMC 2224216.PMID 18162548.

Further reading

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External links

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Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders
TRPA
Activators
Blockers
TRPC
Activators
Blockers
TRPM
Activators
Blockers
TRPML
Activators
Blockers
TRPP
Activators
Blockers
TRPV
Activators
Blockers


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