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Liver X receptor beta

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
NR1H2
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

1P8D,1PQ6,1PQ9,1PQC,1UPV,1UPW,3KFC,3L0E,4DK7,4DK8,4RAK,5HJP,4NQA,5I4V,%%s4NQA

Identifiers
AliasesNR1H2, LXR-b, LXRB, NER, NER-I, RIP15, UNR, Liver X receptor beta, nuclear receptor subfamily 1 group H member 2
External IDsOMIM:600380;MGI:1352463;HomoloGene:21397;GeneCards:NR1H2;OMA:NR1H2 - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)[1]
Chromosome 19 (human)
Genomic location for NR1H2
Genomic location for NR1H2
Band19q13.33Start50,329,653bp[1]
End50,383,388bp[1]
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)[2]
Chromosome 7 (mouse)
Genomic location for NR1H2
Genomic location for NR1H2
Band7|7 B3Start44,199,040bp[2]
End44,203,375bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • popliteal artery

  • tibial arteries

  • right coronary artery

  • thoracic aorta

  • left coronary artery

  • ascending aorta

  • Descending thoracic aorta

  • gastric mucosa

  • gastrocnemius muscle

  • muscle of thigh
Top expressed in
  • granulocyte

  • neural layer of retina

  • lip

  • muscle of thigh

  • right kidney

  • superior frontal gyrus

  • duodenum

  • thymus

  • esophagus

  • ventricular zone
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

7376

22260

Ensembl

ENSG00000131408

ENSMUSG00000060601

UniProt

P55055

Q60644

RefSeq (mRNA)

NM_007121
NM_001256647

NM_001285517
NM_001285518
NM_001285519
NM_009473

RefSeq (protein)

NP_001243576
NP_009052
NP_009052.3

NP_001272446
NP_001272447
NP_001272448
NP_033499

Location (UCSC)Chr 19: 50.33 – 50.38 MbChr 7: 44.2 – 44.2 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Liver X receptor beta (LXR-β) is a member of thenuclear receptor family oftranscription factors. LXR-β is encoded by theNR1H2 gene (nuclear receptor subfamily 1, group H, member 2).[5]

Function

[edit]

Theliver X receptors (LXRs) were originally identified asorphan members of the nuclear receptor superfamily because their ligands were unknown. Like other receptors in the family, LXRs heterodimerize withretinoid X receptor and bind to specificresponse elements (LXREs) characterized bydirect repeats separated by 4 nucleotides. Two genes, alpha (LXRA) and beta, are known to encode LXR proteins.[5][6]

Structure

[edit]

Crystal structure of human liver X receptor β(LXRβ) forming heterodimer with its partner retinoid X receptor α(RXRα) on its cognate element, an AGGTCA direct repeat spaced by 4 nt shows an extended X-shaped arrangement, with DNA- and ligand-binding domains crossed. The LXRβ core binds DNA via canonical contacts and auxiliary DNA contacts that enhance affinity for the response element.[7]

Interactions

[edit]

Liver X receptor beta has been shown tointeract withNCOA6[8] andRetinoid X receptor alpha.[9]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000131408Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000060601Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: NR1H2 nuclear receptor subfamily 1, group H, member 2".
  6. ^Song C, Hiipakka RA, Kokontis JM, Liao S (Jun 1995). "Ubiquitous receptor: structures, immunocytochemical localization, and modulation of gene activation by receptors for retinoic acids and thyroid hormones".Annals of the New York Academy of Sciences.761 (2):38–49.Bibcode:1995NYASA.761...38S.doi:10.1111/j.1749-6632.1995.tb31367.x.PMID 7625741.S2CID 27208069.
  7. ^Lou X, Toresson G, Benod C, Suh JH, Philips KJ, Webb P, Gustafsson JA (Mar 2014). "Structure of the retinoid X receptor α-liver X receptor β (RXRα-LXRβ) heterodimer on DNA".Nature Structural & Molecular Biology.21 (3):277–81.doi:10.1038/nsmb.2778.PMID 24561505.S2CID 23226682.
  8. ^Lee SK, Jung SY, Kim YS, Na SY, Lee YC, Lee JW (Feb 2001)."Two distinct nuclear receptor-interaction domains and CREB-binding protein-dependent transactivation function of activating signal cointegrator-2".Molecular Endocrinology.15 (2):241–54.doi:10.1210/mend.15.2.0595.PMID 11158331.
  9. ^Seol W, Choi HS, Moore DD (Jan 1995)."Isolation of proteins that interact specifically with the retinoid X receptor: two novel orphan receptors".Molecular Endocrinology.9 (1):72–85.doi:10.1210/mend.9.1.7760852.PMID 7760852.

Further reading

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

PDB gallery
  • 1p8d: X-Ray Crystal Structure of LXR Ligand Binding Domain with 24(S),25-epoxycholesterol
    1p8d: X-Ray Crystal Structure of LXR Ligand Binding Domain with 24(S),25-epoxycholesterol
  • 1pq6: HUMAN LXR BETA HORMONE RECEPTOR / GW3965 COMPLEX
    1pq6: HUMAN LXR BETA HORMONE RECEPTOR / GW3965 COMPLEX
  • 1pq9: HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317 COMPLEX
    1pq9: HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317 COMPLEX
  • 1pqc: HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317
    1pqc: HUMAN LXR BETA HORMONE RECEPTOR COMPLEXED WITH T0901317
  • 1upv: CRYSTAL STRUCTURE OF THE HUMAN LIVER X RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST
    1upv: CRYSTAL STRUCTURE OF THE HUMAN LIVER X RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST
  • 1upw: CRYSTAL STRUCTURE OF THE HUMAN LIVER X RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST
    1upw: CRYSTAL STRUCTURE OF THE HUMAN LIVER X RECEPTOR BETA LIGAND BINDING DOMAIN IN COMPLEX WITH A SYNTHETIC AGONIST
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
FXRTooltip Farnesoid X receptor andLXRTooltip liver X receptormodulators
FXRTooltip Farnesoid X receptor
LXRTooltip Liver X receptor
Stub icon

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