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Lipinski's rule of five

From Wikipedia, the free encyclopedia
Rule of thumb to predict if a chemical compound is likely to be an orally active drug
"Rule of five" redirects here. For the rule of thumb as it applies to the C++11 programming language, seeRule of five (C++ programming). For the maxim used in chess endgames, seeRook and pawn versus rook endgame § Rule of five.

Lipinski's rule of five, also known asPfizer's rule of five or simply therule of five (RO5), is arule of thumb to evaluatedruglikeness or determine if achemical compound with a certainpharmacological orbiological activity haschemical properties andphysical properties that would likely make it anorally active drug in humans. The rule was formulated byChristopher A. Lipinski in 1997, based on the observation that most orally administered drugs are relativelysmall and moderatelylipophilicmolecules.[1][2]

The rule describesmolecular properties important for a drug'spharmacokinetics in the human body, including theirabsorption,distribution,metabolism, andexcretion ("ADME"). However, the rule does not predict if a compound is pharmacologically active.

The rule is important to keep in mind duringdrug discovery when a pharmacologically activelead structure is optimized step-wise to increase the activity and selectivity of the compound as well as to ensure drug-like physicochemical properties are maintained as described by Lipinski's rule.[3] Candidate drugs that conform to the RO5 tend to have lower attrition rates duringclinical trials and hence have an increased chance of reaching the market.[2][4]

Omeprazole is a popular drug that conforms to Lipinski's rule of five.

Some authors have criticized the rule of five for the implicit assumption that passive diffusion is the only important mechanism for the entry of drugs into cells, ignoring the role of transporters. For example, O'Hagan and co-authors wrote as follows:[5]

This famous "rule of 5" has been highly influential in this regard, but only about 50 % of orally administered new chemical entities actually obey it.

Studies have also demonstrated that some natural products break the chemical rules used in Lipinski filters such as macrolides and peptides.[6][7][8]

Components of the rule

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Lipinski's rule states that, in general, an orally active drug has no more than one violation of the following criteria:[9]

Note that all numbers are multiples of five, which is the origin of the rule's name.As with many otherrules of thumb, such asBaldwin's rules for ring closure, there are many exceptions.

Variants

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In an attempt to improve the predictions ofdruglikeness, the rules have spawned many extensions, for example the Ghose filter:[10]

  • Partition coefficient logP in −0.4 to +5.6 range
  • Molar refractivity from 40 to 130
  • Molecular weight from 180 to 480
  • Number of atoms from 20 to 70 (includes H-bond donors [e.g. OHs and NHs] and H-bond acceptors [e.g. Ns and Os])

Veber's Rule further questions a 500 molecular weight cutoff. Thepolar surface area and the number of rotatable bonds has been found to better discriminate between compounds that are orally active and those that are not for a large data set of compounds.[11] In particular, compounds which meet only the two criteria of:

  • 10 or fewer rotatable bonds and
  • Polar surface area no greater than 140 Å2

are predicted to have good oral bioavailability.[11]

Lead-like

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During drug discovery, lipophilicity and molecular weight are often increased in order to improve the affinity and selectivity of the drug candidate. Hence it is often difficult to maintain drug-likeness (i.e., RO5 compliance) during hit and lead optimization. Hence it has been proposed that members ofscreening libraries from which hits are discovered should be biased toward lower molecular weight and lipophilicity so that medicinal chemists will have an easier time in delivering optimized drug development candidates that are also drug-like. Hence the rule of five has been extended to therule of three (RO3) for defininglead-like compounds.[12]

A rule of three compliant compound is defined as one that has:

See also

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References

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  1. ^Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (January 1997). "Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings".Advanced Drug Delivery Reviews.46 (1–3):3–26.doi:10.1016/S0169-409X(00)00129-0.PMID 11259830.
  2. ^abLipinski CA (December 2004). "Lead- and drug-like compounds: the rule-of-five revolution".Drug Discovery Today: Technologies.1 (4):337–341.doi:10.1016/j.ddtec.2004.11.007.PMID 24981612.
  3. ^Oprea TI, Davis AM, Teague SJ, Leeson PD (2001). "Is there a difference between leads and drugs? A historical perspective".Journal of Chemical Information and Computer Sciences.41 (5):1308–1315.doi:10.1021/ci010366a.PMID 11604031.
  4. ^Leeson PD, Springthorpe B (November 2007). "The influence of drug-like concepts on decision-making in medicinal chemistry".Nature Reviews. Drug Discovery.6 (11):881–890.doi:10.1038/nrd2445.PMID 17971784.S2CID 205476574.
  5. ^O Hagan S, Swainston N, Handl J, Kell DB (2015)."A 'rule of 0.5' for the metabolite-likeness of approved pharmaceutical drugs".Metabolomics.11 (2):323–339.doi:10.1007/s11306-014-0733-z.PMC 4342520.PMID 25750602.
  6. ^Doak BC, Over B, Giordanetto F, Kihlberg J (September 2014)."Oral druggable space beyond the rule of 5: insights from drugs and clinical candidates".Chemistry & Biology.21 (9):1115–1142.doi:10.1016/j.chembiol.2014.08.013.PMID 25237858.
  7. ^de Oliveira EC, Santana K, Josino L, Lima E, Lima AH, de Souza de Sales Júnior C (April 2021)."Predicting cell-penetrating peptides using machine learning algorithms and navigating in their chemical space".Scientific Reports.11 (1) 7628.Bibcode:2021NatSR..11.7628D.doi:10.1038/s41598-021-87134-w.PMC 8027643.PMID 33828175.
  8. ^Doak BC, Kihlberg J (February 2017)."Drug discovery beyond the rule of 5 - Opportunities and challenges".Expert Opinion on Drug Discovery.12 (2):115–119.doi:10.1080/17460441.2017.1264385.PMID 27883294.
  9. ^Lipinski CA, Lombardo F, Dominy BW, Feeney PJ (March 2001). "Experimental and computational approaches to estimate solubility and permeability in drug discovery and development settings".Advanced Drug Delivery Reviews.46 (1–3):3–26.doi:10.1016/S0169-409X(00)00129-0.PMID 11259830.
  10. ^Ghose AK, Viswanadhan VN, Wendoloski JJ (January 1999). "A knowledge-based approach in designing combinatorial or medicinal chemistry libraries for drug discovery. 1. A qualitative and quantitative characterization of known drug databases".Journal of Combinatorial Chemistry.1 (1):55–68.doi:10.1021/cc9800071.PMID 10746014.
  11. ^abVeber DF, Johnson SR, Cheng HY, Smith BR, Ward KW, Kopple KD (June 2002). "Molecular properties that influence the oral bioavailability of drug candidates".Journal of Medicinal Chemistry.45 (12):2615–2623.CiteSeerX 10.1.1.606.5270.doi:10.1021/jm020017n.PMID 12036371.
  12. ^Congreve M, Carr R, Murray C, Jhoti H (October 2003). "A 'rule of three' for fragment-based lead discovery?".Drug Discovery Today.8 (19):876–877.doi:10.1016/S1359-6446(03)02831-9.PMID 14554012.

External links

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