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LHX3

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

LHX3
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2JTN,2RGT

Identifiers
AliasesLHX3, CPHD3, LIM3, M2-LIM homeobox 3
External IDsOMIM:600577;MGI:102673;HomoloGene:7814;GeneCards:LHX3;OMA:LHX3 - orthologs
Gene location (Human)
Chromosome 9 (human)
Chr.Chromosome 9 (human)[1]
Chromosome 9 (human)
Genomic location for LHX3
Genomic location for LHX3
Band9q34.3Start136,196,250bp[1]
End136,205,128bp[1]
Gene location (Mouse)
Chromosome 2 (mouse)
Chr.Chromosome 2 (mouse)[2]
Chromosome 2 (mouse)
Genomic location for LHX3
Genomic location for LHX3
Band2 A3|2 18.44 cMStart26,090,224bp[2]
End26,098,301bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • pituitary gland

  • anterior pituitary

  • pancreatic ductal cell

  • tibialis anterior muscle

  • popliteal artery

  • testicle

  • Epithelium of choroid plexus

  • optic nerve

  • islet of Langerhans

  • nucleus of brain
Top expressed in
  • Rathke's pouch

  • pituitary gland

  • pars intermedia

  • vestibular sensory epithelium

  • pineal gland

  • pars distalis of adenohypophysis

  • embryo

  • neural layer of retina

  • utricle

  • pretectal area
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

8022

16871

Ensembl

ENSG00000107187

ENSMUSG00000026934

UniProt

Q9UBR4

P50481

RefSeq (mRNA)

NM_014564
NM_178138
NM_001363746

NM_001039653
NM_010711

RefSeq (protein)

NP_055379
NP_835258
NP_001350675

NP_001034742
NP_034841

Location (UCSC)Chr 9: 136.2 – 136.21 MbChr 2: 26.09 – 26.1 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

LIM/homeobox protein Lhx3 is aprotein that in humans is encoded by theLHX3gene.[5][6][7]

Function

[edit]

LHX3 encodes a protein of a large protein family, members of which carry theLIM domain, a unique cysteine-rich zinc-binding domain. The encoded protein is a transcription factor that is required forpituitary development andmotor neuron specification. Two transcript variants encoding distinct isoforms have been identified for this gene.[7]

Clinical significance

[edit]

Mutations in this gene have been associated with a syndrome of combined pituitary hormone deficiency and rigid cervical spine.[7]

Interactions

[edit]

LHX3 has been shown tointeract withLdb1.[8]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000107187Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000026934Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Sloop KW, Meier BC, Bridwell JL, Parker GE, Schiller AM, Rhodes SJ (Jan 2000). "Differential activation of pituitary hormone genes by human Lhx3 isoforms with distinct DNA binding properties".Mol Endocrinol.13 (12):2212–25.doi:10.1210/me.13.12.2212.PMID 10598593.
  6. ^Sloop KW, Showalter AD, Von Kap-Herr C, Pettenati MJ, Rhodes SJ (May 2000). "Analysis of the human LHX3 neuroendocrine transcription factor gene and mapping to the subtelomeric region of chromosome 9".Gene.245 (2):237–43.doi:10.1016/S0378-1119(00)00025-1.PMID 10717474.
  7. ^abc"Entrez Gene: LHX3 LIM homeobox 3".
  8. ^Jurata LW, Pfaff SL, Gill GN (February 1998)."The nuclear LIM domain interactor NLI mediates homo- and heterodimerization of LIM domain transcription factors".J. Biol. Chem.273 (6):3152–7.doi:10.1074/jbc.273.6.3152.PMID 9452425.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous


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