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LBX2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

LBX2
Identifiers
AliasesLBX2, LP3727, ladybird homeobox 2
External IDsOMIM:607164;MGI:1342288;HomoloGene:36314;GeneCards:LBX2;OMA:LBX2 - orthologs
Gene location (Human)
Chromosome 2 (human)
Chr.Chromosome 2 (human)[1]
Chromosome 2 (human)
Genomic location for LBX2
Genomic location for LBX2
Band2p13.1Start74,497,517bp[1]
End74,503,316bp[1]
Gene location (Mouse)
Chromosome 6 (mouse)
Chr.Chromosome 6 (mouse)[2]
Chromosome 6 (mouse)
Genomic location for LBX2
Genomic location for LBX2
Band6 C3|6 35.94 cMStart83,063,348bp[2]
End83,065,224bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right lobe of liver

  • duodenum

  • bone marrow cell

  • mucosa of transverse colon

  • stromal cell of endometrium

  • gallbladder

  • epithelium of colon

  • gonad

  • granulocyte

  • blood
Top expressed in
  • female urethra

  • morula

  • embryo

  • embryo

  • paramesonephric duct

  • genital tubercle

  • adrenal gland

  • tail of embryo

  • surface ectoderm

  • adrenal cortex
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

85474

16815

Ensembl

ENSG00000179528

ENSMUSG00000034968

UniProt

Q6XYB7

Q9WUN8

RefSeq (mRNA)

NM_001282430
NM_001009812

NM_010692

RefSeq (protein)

NP_001009812
NP_001269359

NP_034822

Location (UCSC)Chr 2: 74.5 – 74.5 MbChr 6: 83.06 – 83.07 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Ladybird homeobox 2 (LBX2) is aprotein that is encoded by theLBX2 gene, located on thesecond chromosome[5] inhumans, and on the sixth chromosome inmice.[6]

LBX2 belongs to thehomeobox gene family, which plays important roles in embryonic development and tissue differentiation. The protein encoded by LBX2 functions as atranscription factor and is expressed in various tissues, including the heart, skeletal muscle, and nervous system. LBX2 is involved in the regulation of cardiac development, particularly in the formation of the atrial septum. Mutations or dysregulation of LBX2 have been associated with an increased risk of congenital heart defects, specificallyatrial septal defects.[7]

LBX2 plays a significant role in the development of variousorgans, such as theheart, and has been implicated in the growth of certaincancers.[8]

Gene structure

[edit]

The LBX2 gene shares similarities with its rodent counterpart, also named LBX2, in genomic structure. Both human and rodent LBX2 genes are composed of twoexons separated by anintron.[5][9]

The upstream region of the mouse LBX2, which shares a high degree of similarity to its human counterpart, has also been observed to be aregulatory sequence that influences the expression ofreporter genes.[10] This regulatory influence is tissue-specific, highlighting the complexity of gene expression in different biological contexts.

Expression and function

[edit]

LBX2 is a member of the ladybird family ofhomeobox genes, which are crucial in developmental processes. In rodent studies, LBX2 has been found to be expressed in various developing systems, notably theurogenital system,eye, andbrain.[10]

CRISPR/Cas9 technology has been used to create zebrafish models lacking LBX2. Observations of these modified zebrafish revealed several notable differences compared to normal specimens, including:

These findings suggest that LBX2 plays a significant role in the development of theheart.

Clinical significance

[edit]

Alström syndrome

[edit]

Whilepolymorphisms in the LBX2 gene have been identified, studies indicate that mutations in the coding region of LBX2 do not account forAlström syndrome, a genetic disorder characterized by ocular and urogenital abnormalities.[10]

Atrial septal defect

[edit]

A study aimed at identifying causal genes forostium secundum atrial septal defect (ASD) discovered that a raremissense mutation in LBX2 was associated with this condition.[7]

Ovarian cancer

[edit]

Laboratory studies have indicated that LBX2 promotes rapidcell proliferation inovarian cancers and is a key gene involved inovarian cancer formation. It has been identified as a potential target for therapeutic interventions.[11]

Lung cancer

[edit]

Lung adenocarcinoma (LUAD) is the most common type of lung cancer. Studies have shown that reducing LBX2 expression inhibits LUAD growth, whereas its overexpression promotes tumor growth and invasiveness.[12] In most LUAD cases, LBX2 is expressed at elevated levels, correlating with poor clinical outcomes.[12]

Conclusion

[edit]

LBX2 is a crucial gene involved in development anddisease processes. Its role in the development of organs, particularly in thecardiac andreproductive systems, alongside its implications incancer biology, emphasise its importance to the healthy development ofhumans,rodents andzebrafish.

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000179528Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000034968Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"LBX2 ladybird homeobox 2 [Homo sapiens (human)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved2024-10-13.
  6. ^"Gene: Lbx2 (ENSMUSG00000034968) - Summary - Mus_musculus - Ensembl genome browser 111".jan2024.archive.ensembl.org. Retrieved2024-10-13.
  7. ^abcWang J, Luo J, Chen Q, Wang X, He J, Zhang W, et al. (August 2018). "Identification of LBX2 as a novel causal gene of atrial septal defect".International Journal of Cardiology.265:188–194.doi:10.1016/j.ijcard.2018.04.038.PMID 29669692.
  8. ^Su Y, Li C, Fang Y, Gu X, Zheng Q, Lu J, et al. (February 2023)."The role of LncRNA LBX2-AS1 in cancers: functions, mechanisms and potential clinical utility".Clinical & Translational Oncology.25 (2):293–305.doi:10.1007/s12094-022-02944-2.PMC 9873731.PMID 36131071.
  9. ^"Lbx2 ladybird homeobox 2 [Rattus norvegicus (Norway rat)] - Gene - NCBI".www.ncbi.nlm.nih.gov. Retrieved2024-10-13.
  10. ^abcChen F, Collin GB, Liu KC, Beier DR, Eccles M, Nishina PM, et al. (June 2001). "Characterization of the murine Lbx2 promoter, identification of the human homologue, and evaluation as a candidate for Alström syndrome".Genomics.74 (2):219–227.doi:10.1006/geno.2001.6539.PMID 11386758.
  11. ^Xiong J, Liang H, Sun X, Gao K (April 2024)."Histone modification-linked prognostic model for ovarian cancer reveals LBX2 as a novel growth promoter".Journal of Cellular and Molecular Medicine.28 (8) e18260.doi:10.1111/jcmm.18260.PMC 10960176.PMID 38520216.
  12. ^abHu J, Bai Y, Zhang Q, Li M, Yin R, Xu L (August 2020)."Identification of LBX2 as a novel causal gene of lung adenocarcinoma".Thoracic Cancer.11 (8):2137–2145.doi:10.1111/1759-7714.13506.PMC 7396393.PMID 32567804.
(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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