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KLF13

From Wikipedia, the free encyclopedia
Protein found in humans
KLF13
Identifiers
AliasesKLF13, BTEB3, FKLF2, NSLP1, RFLAT-1, RFLAT1, Kruppel-like factor 13, Kruppel like factor 13
External IDsOMIM:605328;MGI:1354948;HomoloGene:32288;GeneCards:KLF13;OMA:KLF13 - orthologs
Gene location (Human)
Chromosome 15 (human)
Chr.Chromosome 15 (human)[1]
Chromosome 15 (human)
Genomic location for KLF13
Genomic location for KLF13
Band15q13.3Start31,326,835bp[1]
End31,435,665bp[1]
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)[2]
Chromosome 7 (mouse)
Genomic location for KLF13
Genomic location for KLF13
Band7|7 CStart63,536,099bp[2]
End63,588,663bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right hemisphere of cerebellum

  • granulocyte

  • right lung

  • mucosa of transverse colon

  • right frontal lobe

  • left lobe of thyroid gland

  • body of pancreas

  • right lobe of thyroid gland

  • monocyte

  • ganglionic eminence
Top expressed in
  • Rostral migratory stream

  • molar

  • thymus

  • granulocyte

  • blood

  • ankle

  • hair follicle

  • mesenteric lymph nodes

  • external carotid artery

  • Region I of hippocampus proper
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

51621

50794

Ensembl

ENSG00000169926
ENSG00000275746

ENSMUSG00000052040

UniProt

Q9Y2Y9

Q9JJZ6

RefSeq (mRNA)

NM_001302461
NM_015995

NM_021366

RefSeq (protein)

NP_001289390
NP_057079

NP_067341

Location (UCSC)Chr 15: 31.33 – 31.44 MbChr 7: 63.54 – 63.59 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Kruppel-like factor 13, also known asKLF13, is aprotein that in humans is encoded by theKLF13gene.[5][6][7]

There is some evidence forKLF13 having a role in obesity. A methylation site, cg07814318, within the firstintron ofKLF13 has been associated with obesity and orexigenic processes.[8]Ghrelin levels also positively correlated with methylation levels of cg07814318.[8] Moreover, expression levels ofKLF13 were decreased and increased in the brains of starved and obese mice, respectively.[8]

Function

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KLF13 belongs to a family oftranscription factors that contain 3 classicalzinc finger DNA-binding domains consisting of a zinc atom tetrahedrally coordinated by 2 cysteines and 2 histidines (C2H2 motif). These transcription factors bind to GC-rich sequences and related GT and CACCC boxes.[5][9]

KLF13 was first described as theRANTES factor of late activatedT lymphocytes (RFLAT)-1.[7] It regulates the expression of thechemokine RANTES in T lymphocytes. It functions as a lynchpin, inducing a large enhancesome. KLF13 knock-out mice show a defect in lymphocyte survival as KLF13 is a regulator ofBcl-xL expression.[7][10][11][12][13][14][15]

Interactions

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KLF13 has been shown tointeract withCREB-binding protein,[16]Heat shock protein 47[16] andPCAF.[16]

See also

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References

[edit]
  1. ^abcENSG00000275746 GRCh38: Ensembl release 89: ENSG00000169926, ENSG00000275746Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000052040Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ab"Entrez Gene: KLF13 Kruppel-like factor 13".
  6. ^Cook T, Gebelein B, Urrutia R (Jun 1999)."Sp1 and its likes: biochemical and functional predictions for a growing family of zinc finger transcription factors".Annals of the New York Academy of Sciences.880 (1 CELL AND MOLE):94–102.Bibcode:1999NYASA.880...94C.doi:10.1111/j.1749-6632.1999.tb09513.x.PMID 10415854.S2CID 7618847.
  7. ^abcSong A, Chen YF, Thamatrakoln K, Storm TA, Krensky AM (Jan 1999)."RFLAT-1: a new zinc finger transcription factor that activates RANTES gene expression in T lymphocytes".Immunity.10 (1):93–103.doi:10.1016/S1074-7613(00)80010-2.PMID 10023774.
  8. ^abcWiemerslage L, Islam R, van der Kamp C, Cao H, Olivo G, Ence-Eriksson F, Castillo S, Larsen AL, Bandstein M, Dahlberg LS, Perland E, Gustavsson V, Nilsson J, Vogel H, Schürmann A, Larsson EM, Rask-Andersen M, Benedict C, Schiöth HB (14 Feb 2017). "A DNA methylation site within the KLF13 gene is associated with orexigenic processes based on neural responses and ghrelin levels".Int J Obes (Lond).43 (6):990–994.doi:10.1038/ijo.2017.43.PMID 28194012.S2CID 52835570.
  9. ^Scohy S, Gabant P, Van Reeth T, Hertveldt V, Drèze PL, Van Vooren P, Rivière M, Szpirer J, Szpirer C (Nov 2000). "Identification of KLF13 and KLF14 (SP6), novel members of the SP/XKLF transcription factor family".Genomics.70 (1):93–101.doi:10.1006/geno.2000.6362.PMID 11087666.
  10. ^Song A, Nikolcheva T, Krensky AM (Oct 2000). "Transcriptional regulation of RANTES expression in T lymphocytes".Immunological Reviews.177 (1):236–45.doi:10.1034/j.1600-065X.2000.17610.x.PMID 11138780.S2CID 30184294.
  11. ^Nikolcheva T, Pyronnet S, Chou SY, Sonenberg N, Song A, Clayberger C, Krensky AM (Jul 2002)."A translational rheostat for RFLAT-1 regulates RANTES expression in T lymphocytes".The Journal of Clinical Investigation.110 (1):119–26.doi:10.1172/JCI15336.PMC 151028.PMID 12093895.
  12. ^Song A, Patel A, Thamatrakoln K, Liu C, Feng D, Clayberger C, Krensky AM (Aug 2002)."Functional domains and DNA-binding sequences of RFLAT-1/KLF13, a Krüppel-like transcription factor of activated T lymphocytes".The Journal of Biological Chemistry.277 (33):30055–65.doi:10.1074/jbc.M204278200.PMID 12050170.
  13. ^Zhou M, McPherson L, Feng D, Song A, Dong C, Lyu SC, Zhou L, Shi X, Ahn YT, Wang D, Clayberger C, Krensky AM (May 2007)."Kruppel-like transcription factor 13 regulates T lymphocyte survival in vivo".Journal of Immunology.178 (9):5496–504.doi:10.4049/jimmunol.178.9.5496.PMC 2664650.PMID 17442931.
  14. ^Huang B, Ahn YT, McPherson L, Clayberger C, Krensky AM (Jun 2007)."Interaction of PRP4 with Kruppel-like factor 13 regulates CCL5 transcription".Journal of Immunology.178 (11):7081–7.doi:10.4049/jimmunol.178.11.7081.PMC 2674583.PMID 17513757.
  15. ^Ahn YT, Huang B, McPherson L, Clayberger C, Krensky AM (Jan 2007)."Dynamic interplay of transcriptional machinery and chromatin regulates "late" expression of the chemokine RANTES in T lymphocytes".Molecular and Cellular Biology.27 (1):253–66.doi:10.1128/MCB.01071-06.PMC 1800668.PMID 17074812.
  16. ^abcSong CZ, Keller K, Murata K, Asano H,Stamatoyannopoulos G (Mar 2002)."Functional interaction between coactivators CBP/p300, PCAF, and transcription factor FKLF2".The Journal of Biological Chemistry.277 (9):7029–36.doi:10.1074/jbc.M108826200.PMC 2808425.PMID 11748222.

Further reading

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External links

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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
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