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KIR2DS4

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

KIR2DS4
Available structures
PDBHuman UniProt search:PDBeRCSB
List of PDB id codes

3H8N

Identifiers
AliasesKIR2DS4, CD158I, KIR1D, KIR2DS1, KIR412, KKA3, NKAT-8, NKAT8, KIR-2DS4, killer cell immunoglobulin like receptor, two Ig domains and short cytoplasmic tail 4
External IDsOMIM:604955;GeneCards:KIR2DS4;OMA:KIR2DS4 - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)[1]
Chromosome 19 (human)
Genomic location for KIR2DS4
Genomic location for KIR2DS4
Band19q13.42Start54,832,676bp[1]
End54,848,569bp[1]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • tendon of biceps brachii

  • granulocyte

  • blood

  • bone marrow cell

  • spleen

  • right lung

  • placenta

  • endometrium

  • pharynx

  • upper lobe of lung
    n/a
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3809

n/a

Ensembl
ENSG00000273931
ENSG00000274406
ENSG00000277078
ENSG00000274807
ENSG00000275353

ENSG00000275731
ENSG00000273526
ENSG00000275351
ENSG00000274921
ENSG00000277345
ENSG00000276885
ENSG00000284408
ENSG00000274957
ENSG00000276154
ENSG00000284307
ENSG00000283779
ENSG00000274324
ENSG00000221957
ENSG00000274714
ENSG00000274533
ENSG00000276209
ENSG00000276634
ENSG00000276465
ENSG00000274947
ENSG00000283727
ENSG00000283846
ENSG00000276395
ENSG00000275938
ENSG00000284244
ENSG00000284264
ENSG00000283870
ENSG00000283882
ENSG00000276254

n/a

UniProt

P43632
Q8NHJ0

n/a

RefSeq (mRNA)

NM_012314
NM_001281971
NM_001281972

n/a

RefSeq (protein)

NP_001268900
NP_001268901
NP_036446
NP_001268900.1

n/a

Location (UCSC)Chr 19: 54.83 – 54.85 Mbn/a
PubMed search[2]n/a
Wikidata
View/Edit Human

Killer cell immunoglobulin-like receptor 2DS4 is aprotein that in humans is encoded by theKIR2DS4gene.[3][4][5]

Killer cell immunoglobulin-like receptors (KIRs) are transmembrane glycoproteins expressed by natural killer cells and subsets of T cells. The KIR genes are polymorphic and highly homologous and they are found in a cluster on chromosome 19q13.4 within the 1 Mbleukocyte receptor complex (LRC). The gene content of the KIR gene cluster varies among haplotypes, although several "framework" genes are found in all haplotypes (KIR3DL3, KIR3DP1, KIR3DL4, KIR3DL2). The KIR proteins are classified by the number of extracellular immunoglobulin domains (2D or 3D) and by whether they have a long (L) or short (S) cytoplasmic domain. KIR proteins with the long cytoplasmic domain transduce inhibitory signals upon ligand binding via an immune tyrosine-based inhibitory motif (ITIM), while KIR proteins with the short cytoplasmic domain lack the ITIM motif and instead associate with the TYRO protein tyrosine kinase (DAP12) binding protein to transduce activating signals. The ligands for several KIR proteins are subsets of HLA class I molecules; thus, KIR proteins are thought to play an important role in regulation of the immune response.[5]

KIR2DS4 is a product of a gene conversion withKIR3DL2.[6] KIR2DS4 has unusual HLA-I specificity binding some HLA-C allotypes and HLA-A*11.[6] A common allele ofKIR2DS4 encodes a truncated version (KIR-1D) that has no HLA-I binding ability.[6][7] Recent evidence suggests KIR2DS4 detects HLA-C presented peptides in a peptide-specific manner, detecting peptides conserved in bacteria.[8][9][10]

See also

[edit]

References

[edit]
  1. ^abcENSG00000274406, ENSG00000277078, ENSG00000274807, ENSG00000275353, ENSG00000275731, ENSG00000273526, ENSG00000275351, ENSG00000274921, ENSG00000277345, ENSG00000276885, ENSG00000284408, ENSG00000274957, ENSG00000276154, ENSG00000284307, ENSG00000283779, ENSG00000274324, ENSG00000221957, ENSG00000274714, ENSG00000274533, ENSG00000276209, ENSG00000276634, ENSG00000276465, ENSG00000274947, ENSG00000283727, ENSG00000283846, ENSG00000276395, ENSG00000275938, ENSG00000284244, ENSG00000284264, ENSG00000283870, ENSG00000283882, ENSG00000276254 GRCh38: Ensembl release 89: ENSG00000273931, ENSG00000274406, ENSG00000277078, ENSG00000274807, ENSG00000275353, ENSG00000275731, ENSG00000273526, ENSG00000275351, ENSG00000274921, ENSG00000277345, ENSG00000276885, ENSG00000284408, ENSG00000274957, ENSG00000276154, ENSG00000284307, ENSG00000283779, ENSG00000274324, ENSG00000221957, ENSG00000274714, ENSG00000274533, ENSG00000276209, ENSG00000276634, ENSG00000276465, ENSG00000274947, ENSG00000283727, ENSG00000283846, ENSG00000276395, ENSG00000275938, ENSG00000284244, ENSG00000284264, ENSG00000283870, ENSG00000283882, ENSG00000276254Ensembl, May 2017
  2. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  3. ^Bottino C, Sivori S, Vitale M, Cantoni C, Falco M, Pende D, et al. (August 1996). "A novel surface molecule homologous to the p58/p50 family of receptors is selectively expressed on a subset of human natural killer cells and induces both triggering of cell functions and proliferation".European Journal of Immunology.26 (8):1816–1824.doi:10.1002/eji.1830260823.PMID 8765026.S2CID 23526107.
  4. ^Wagtmann N, Biassoni R, Cantoni C, Verdiani S, Malnati MS, Vitale M, et al. (May 1995)."Molecular clones of the p58 NK cell receptor reveal immunoglobulin-related molecules with diversity in both the extra- and intracellular domains".Immunity.2 (5):439–449.doi:10.1016/1074-7613(95)90025-X.PMID 7749980.
  5. ^ab"Entrez Gene: KIR2DS4 killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4".
  6. ^abcGraef T, Moesta AK, Norman PJ, Abi-Rached L, Vago L, Older Aguilar AM, et al. (October 2009)."KIR2DS4 is a product of gene conversion with KIR3DL2 that introduced specificity for HLA-A*11 while diminishing avidity for HLA-C".The Journal of Experimental Medicine.206 (11):2557–2572.doi:10.1084/jem.20091010.PMC 2768862.PMID 19858347.
  7. ^Middleton D, Gonzalez A, Gilmore PM (February 2007). "Studies on the expression of the deleted KIR2DS4*003 gene product and distribution of KIR2DS4 deleted and nondeleted versions in different populations".Human Immunology.68 (2):128–134.doi:10.1016/j.humimm.2006.12.007.PMID 17321903.
  8. ^Sim MJ, Rajagopalan S, Altmann DM, Boyton RJ, Sun PD, Long EO (June 2019)."Human NK cell receptor KIR2DS4 detects a conserved bacterial epitope presented by HLA-C".Proceedings of the National Academy of Sciences of the United States of America.116 (26):12964–12973.Bibcode:2019PNAS..11612964S.doi:10.1073/pnas.1903781116.PMC 6601252.PMID 31138701.
  9. ^Parham P (June 2019)."A natural killer cell receptor takes sharp aim at the world of bacteria".Proceedings of the National Academy of Sciences of the United States of America.116 (26):12601–12603.Bibcode:2019PNAS..11612601P.doi:10.1073/pnas.1907937116.PMC 6601266.PMID 31175150.
  10. ^Sim MJ, Brennan P, Wahl KL, Lu J, Rajagopalan S, Sun PD, et al. (September 2023). "Innate receptors with high specificity for HLA class I-peptide complexes".Science Immunology.8 (87) eadh1781.doi:10.1126/sciimmunol.adh1781.PMID 37683038.

Further reading

[edit]
PDB gallery
  • 1b6u: CRYSTAL STRUCTURE OF THE HUMAN KILLER CELL INHIBITORY RECEPTOR (KIR2DL3) SPECIFIC FOR HLA-CW3 RELATED ALLELES
    1b6u: CRYSTAL STRUCTURE OF THE HUMAN KILLER CELL INHIBITORY RECEPTOR (KIR2DL3) SPECIFIC FOR HLA-CW3 RELATED ALLELES
  • 1efx: STRUCTURE OF A COMPLEX BETWEEN THE HUMAN NATURAL KILLER CELL RECEPTOR KIR2DL2 AND A CLASS I MHC LIGAND HLA-CW3
    1efx: STRUCTURE OF A COMPLEX BETWEEN THE HUMAN NATURAL KILLER CELL RECEPTOR KIR2DL2 AND A CLASS I MHC LIGAND HLA-CW3
  • 1im9: Crystal structure of the human natural killer cell inhibitory receptor KIR2DL1 bound to its MHC ligand HLA-Cw4
    1im9: Crystal structure of the human natural killer cell inhibitory receptor KIR2DL1 bound to its MHC ligand HLA-Cw4
  • 1m4k: Crystal structure of the human natural killer cell activator receptor KIR2DS2 (CD158j)
    1m4k: Crystal structure of the human natural killer cell activator receptor KIR2DS2 (CD158j)
  • 1nkr: INHIBITORY RECEPTOR (P58-CL42) FOR HUMAN NATURAL KILLER CELLS
    1nkr: INHIBITORY RECEPTOR (P58-CL42) FOR HUMAN NATURAL KILLER CELLS
  • 2dl2: KILLER IMMUNOGLOBULIN RECEPTOR 2DL2
    2dl2: KILLER IMMUNOGLOBULIN RECEPTOR 2DL2
  • 2dli: KILLER IMMUNOGLOBULIN RECEPTOR 2DL2,TRIGONAL FORM
    2dli: KILLER IMMUNOGLOBULIN RECEPTOR 2DL2,TRIGONAL FORM
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This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

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