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KCNK13

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens

KCNK13
Identifiers
AliasesKCNK13, K2p13.1, THIK-1, THIK1, potassium two pore domain channel subfamily K member 13
External IDsOMIM:607367;MGI:2384976;HomoloGene:69351;GeneCards:KCNK13;OMA:KCNK13 - orthologs
Gene location (Human)
Chromosome 14 (human)
Chr.Chromosome 14 (human)[1]
Chromosome 14 (human)
Genomic location for KCNK13
Genomic location for KCNK13
Band14q32.11Start90,061,994bp[1]
End90,185,853bp[1]
Gene location (Mouse)
Chromosome 12 (mouse)
Chr.Chromosome 12 (mouse)[2]
Chromosome 12 (mouse)
Genomic location for KCNK13
Genomic location for KCNK13
Band12|12 EStart99,930,758bp[2]
End100,028,941bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right testis

  • left testis

  • monocyte

  • granulocyte

  • appendix

  • human kidney

  • right auricle

  • left lobe of thyroid gland

  • prefrontal cortex

  • right lobe of thyroid gland
Top expressed in
  • secondary oocyte

  • stroma of bone marrow

  • primary oocyte

  • zygote

  • embryo

  • left lung lobe

  • superior frontal gyrus

  • deep cerebellar nuclei

  • dentate gyrus of hippocampal formation granule cell

  • primary visual cortex
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

56659

217826

Ensembl

ENSG00000152315

ENSMUSG00000045404

UniProt

Q9HB14

Q8R1P5

RefSeq (mRNA)

NM_022054

NM_001164426
NM_001164427
NM_146037

RefSeq (protein)

NP_071337

NP_001157898
NP_001157899
NP_666149

Location (UCSC)Chr 14: 90.06 – 90.19 MbChr 12: 99.93 – 100.03 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Potassium channel, subfamily K, member 13 (KCNK13), also known as K2P13.1 or THIK-1, is aprotein that in humans is encoded by theKCNK13gene. It is apotassium channel containing two pore-forming P domains.[5][6]

Function

[edit]
Ribbon structure of homodimeric two-pore potassium channel K2P13 (THIK-1). Subunits are colored in gray and purple. Transmembrane helices M1-M4, pore helix PH2 (PH1 not shown), and cap helices CH1-CH2 are labeled. Horizontal black lines represent the cell membrane, with extracellular and intracellular regions labeled.
Ribbon structure of homodimeric two-pore potassium channel K2P13 (THIK-1).[7]

K2P13.1 was first discovered in 2000 from a ratcDNA library, along with the closely related proteinK2P12.1[5] The two channels were named tandem pore domain halothane-inhibited K+ channel 1 and 2 (THIK-1 and THIK-2) because theanesthetichalothane inhibited the potassium current. THIK-1 was also shown to be activated byarachidonic acid and displayed mild voltage dependence, with moderate outward rectification at low external K+ and weakinward rectification with nearly symmetrical K+ concentrations.[5][8] Later research showed that THIK-1 can be activated byG-protein-coupled receptor pathways[9] and by polyanioniclipids such asPIP2 andoleoyl-CoA.[10]

In humans, THIK-1 expression is almost exclusively restricted tomicroglia, where it functions as the mainpotassium channel and is responsible for maintaining theirresting membrane potential through tonic background potassium conductance.[11] THIK-1 activity can regulate microglial ramification, surveillance,NLRP3inflammasome activation, and subsequent release of pro-inflammatory cytokineinterleukin-1β (IL-1β).[12][13][14] It also plays a role in cell shrinkage during apoptosis via caspase-8 cleavage.[15]

See also

[edit]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000152315Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000045404Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abcRajan S, Wischmeyer E, Karschin C, Preisig-Müller R, Grzeschik KH, Daut J, Karschin A, Derst C (March 2001)."THIK-1 and THIK-2, a novel subfamily of tandem pore domain K+ channels".J. Biol. Chem.276 (10):7302–11.doi:10.1074/jbc.M008985200.PMID 11060316.
  6. ^Goldstein SA, Bayliss DA, Kim D, Lesage F, Plant LD, Rajan S (December 2005)."International Union of Pharmacology. LV. Nomenclature and molecular relationships of two-P potassium channels".Pharmacol. Rev.57 (4):527–40.doi:10.1124/pr.57.4.12.PMID 16382106.S2CID 7356601.
  7. ^Rödström KE, Eymsh B, Proks P, Hayre MS, Madry C, Rowland A, Newstead S, Baukrowitz T, Schewe M (2024-06-27),CryoEM Structure of the human THIK-1 K2P K+ Channel Reveals a Lower 'Y-gate' Regulated by Lipids and Anaesthetics,doi:10.1101/2024.06.26.600475, retrieved2024-12-04
  8. ^Aggarwal P, Singh S, Ravichandiran V (2021-08-01)."Two-Pore Domain Potassium Channel in Neurological Disorders".The Journal of Membrane Biology.254 (4):367–380.doi:10.1007/s00232-021-00189-8.ISSN 1432-1424.PMID 34169340.
  9. ^Tateyama M, Kubo Y (2023-04-26)."Regulation of the two-pore domain potassium channel, THIK-1 and THIK-2, by G protein coupled receptors".PLOS ONE.18 (4): e0284962.Bibcode:2023PLoSO..1884962T.doi:10.1371/journal.pone.0284962.ISSN 1932-6203.PMC 10132538.PMID 37099539.
  10. ^Riel EB, Jürs BC, Cordeiro S, Musinszki M, Schewe M, Baukrowitz T (2022-02-07)."The versatile regulation of K2P channels by polyanionic lipids of the phosphoinositide and fatty acid metabolism".Journal of General Physiology.154 (2).doi:10.1085/jgp.202112989.ISSN 0022-1295.PMC 8693234.PMID 34928298.
  11. ^Rifat A, Ossola B, Bürli RW, Dawson LA, Brice NL, Rowland A, Lizio M, Xu X, Page K, Fidzinski P, Onken J, Holtkamp M, Heppner FL, Geiger JR, Madry C (2024-02-26)."Differential contribution of THIK-1 K+ channels and P2X7 receptors to ATP-mediated neuroinflammation by human microglia".Journal of Neuroinflammation.21 (1): 58.doi:10.1186/s12974-024-03042-6.ISSN 1742-2094.PMC 10895799.PMID 38409076.
  12. ^Madry C, Kyrargyri V, Arancibia-Cárcamo IL, Jolivet R, Kohsaka S, Bryan RM, Attwell D (January 2018)."Microglial Ramification, Surveillance, and Interleukin-1β Release Are Regulated by the Two-Pore Domain K+ Channel THIK-1".Neuron.97 (2): 299–312.e6.doi:10.1016/j.neuron.2017.12.002.PMC 5783715.PMID 29290552.
  13. ^Xu Z, Chen Zm, Wu X, Zhang L, Cao Y, Zhou P (2020-12-07)."Distinct Molecular Mechanisms Underlying Potassium Efflux for NLRP3 Inflammasome Activation".Frontiers in Immunology.11.doi:10.3389/fimmu.2020.609441.ISSN 1664-3224.PMC 7793832.PMID 33424864.
  14. ^Drinkall S, Lawrence CB, Ossola B, Russell S, Bender C, Brice NB, Dawson LA, Harte M, Brough D (2022)."The two pore potassium channel THIK-1 regulates NLRP3 inflammasome activation".Glia.70 (7):1301–1316.doi:10.1002/glia.24174.ISSN 1098-1136.PMC 9314991.PMID 35353387.
  15. ^Sakamaki K, Ishii TM, Sakata T, Takemoto K, Takagi C, Takeuchi A, Morishita R, Takahashi H, Nozawa A, Shinoda H, Chiba K, Sugimoto H, Saito A, Tamate S, Satou Y (2016-11-01)."Dysregulation of a potassium channel, THIK-1, targeted by caspase-8 accelerates cell shrinkage".Biochimica et Biophysica Acta (BBA) - Molecular Cell Research.1863 (11):2766–2783.doi:10.1016/j.bbamcr.2016.08.010.ISSN 0167-4889.PMID 27566292.

Further reading

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External links

[edit]
Ligand-gated
Voltage-gated
Constitutively active
Proton-gated
Voltage-gated
Calcium-activated
Inward-rectifier
Tandem pore domain
Voltage-gated
Miscellaneous
Cl:Chloride channel
H+:Proton channel
M+:CNG cation channel
M+:TRP cation channel
H2O (+solutes):Porin
Cytoplasm:Gap junction
By gating mechanism
Ion channel class
see alsodisorders


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