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JARID2

From Wikipedia, the free encyclopedia
Protein-coding gene in the species Homo sapiens
JARID2
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

5HYN

Identifiers
AliasesJARID2, JMJ, jumonji and AT-rich interaction domain containing 2
External IDsOMIM:601594;MGI:104813;HomoloGene:31279;GeneCards:JARID2;OMA:JARID2 - orthologs
Gene location (Human)
Chromosome 6 (human)
Chr.Chromosome 6 (human)[1]
Chromosome 6 (human)
Genomic location for JARID2
Genomic location for JARID2
Band6p22.3Start15,246,069bp[1]
End15,522,042bp[1]
Gene location (Mouse)
Chromosome 13 (mouse)
Chr.Chromosome 13 (mouse)[2]
Chromosome 13 (mouse)
Genomic location for JARID2
Genomic location for JARID2
Band13 A5|13 21.66 cMStart44,882,950bp[2]
End45,075,119bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • secondary oocyte

  • buccal mucosa cell

  • sperm

  • gingival epithelium

  • trabecular bone

  • nipple

  • amniotic fluid

  • dorsal motor nucleus of vagus nerve

  • tendon of biceps brachii

  • Brodmann area 23
Top expressed in
  • Rostral migratory stream

  • internal carotid artery

  • external carotid artery

  • tail of embryo

  • renal corpuscle

  • secondary oocyte

  • zygote

  • medullary collecting duct

  • gastrula

  • hair follicle
More reference expression data
BioGPS


More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3720

16468

Ensembl

ENSG00000008083

ENSMUSG00000038518

UniProt

Q92833

Q62315

RefSeq (mRNA)

NM_001267040
NM_004973

NM_001205043
NM_001205044
NM_021878
NM_001360281

RefSeq (protein)

NP_001253969
NP_004964

NP_001191972
NP_001191973
NP_068678
NP_001347210

Location (UCSC)Chr 6: 15.25 – 15.52 MbChr 13: 44.88 – 45.08 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Protein Jumonji is aprotein that in humans is encoded by theJARID2gene.[5][6] JARID2 is a member of thealpha-ketoglutarate-dependent hydroxylase superfamily.

Jarid2 (jumonji, AT rich interactive domain 2) is a protein coding gene that functions as a putativetranscription factor. Distinguished as anuclear protein necessary for mouseembryogenesis, Jarid2 is a member of the jumonji family that contains a DNA binding domain known as theAT-rich interaction domain (ARID).[7][8][9][10]In vitro studies of Jarid2 reveal that ARID along with other functional domains are involved in DNA binding, nuclear localization,transcriptional repression,[11] and recruitment of Polycomb-repressive complex 2 (PRC2).[12][13] Intracellular mechanisms underlying these interactions remain largely unknown.

In search of developmentally important genes, Jarid2 has previously been identified bygene trap technology as an important factor necessary fororgan development.[7][11][14] During mouse organogenesis, Jarid2 is involved in the formation of theneural tube and development of the liver, spleen, thymus and cardiovascular system.[15][16] Continuous Jarid2 expression in the tissues of the heart, highlight its presiding role in the development of both the embryonic and the adult heart.[7] Mutant models of Jarid2 embryos show severe heart malformations, ventricular septal defects,noncompaction of the ventricular wall, andatrial enlargement.[7] Homozygous mutants of Jarid2 are found to die soon after birth.[7] Overexpression of the mouse Jarid2 gene has been reported to represscardiomyocyte proliferation through it close interaction with retinoblastoma protein (Rb), a master cell cycle regulator.[11][14][17] Retinoblastoma-binding protein-2 and the human SMCX protein share regions of homology between mice and humans.[5]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000008083Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000038518Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^abBerge-Lefranc JL, Jay P, Massacrier A, Cau P, Mattei MG, Bauer S, Marsollier C, Berta P, Fontes M (Feb 1997)."Characterization of the human jumonji gene".Hum Mol Genet.5 (10):1637–41.doi:10.1093/hmg/5.10.1637.PMID 8894700.
  6. ^"Entrez Gene: JARID2 jumonji, AT rich interactive domain 2".
  7. ^abcdeKim TG, Kraus JC, Chen J, Lee Y (2004)."Jumonji, a critical factor for cardiac development, functions as a transcriptional repressor".J. Biol. Chem.278 (43):42247–55.doi:10.1074/jbc.M307386200.PMID 12890668.
  8. ^Mysliwiec MR, Kim TG, Lee Y (2007)."Characterization of zinc finger protein 496 that interacts with jumonji/jarid2".FEBS Letters.581 (14):2633–40.Bibcode:2007FEBSL.581.2633M.doi:10.1016/j.febslet.2007.05.006.PMC 2002548.PMID 17521633.
  9. ^Takahashi M, Kojima M, Nakajima K, Suzuki-Migishima R, Motegi Y, Yokoyama M, Takeuchi, T (2004). "Cardiac abnormalities cause early lethality of jumonji mutant mice".Biochemical and Biophysical Research Communications.324 (4):1319–23.Bibcode:2004BBRC..324.1319T.doi:10.1016/j.bbrc.2004.09.203.PMID 15504358.
  10. ^Toyoda M, Kojima M, Takeuchi T (2000). "Jumonji is a nuclear protein that participates in the negative regulation of cell growth".Biochemical and Biophysical Research Communications.274 (2):332–6.Bibcode:2000BBRC..274..332T.doi:10.1006/bbrc.2000.3138.PMID 10913339.
  11. ^abcKlassen SS, Rabkin SW (2008). "Nitric oxide induces gene expression of jumonji and retinoblastoma 2 protein while reducing expression of atrial natriuretic peptide precursor type B in cardiomyocytes".Folia Biologica.54 (2):65–70.doi:10.14712/fb2008054020065.PMID 18498724.
  12. ^Pasini D, Cloos PA, Walfridsson J, Olsson L, Bukowski JP, Johansen JV, Helin K (2010). "JARID2 regulates binding of the polycomb repressive complex 2 to target genes in ES cells".Nature.464 (7286):306–10.Bibcode:2010Natur.464..306P.doi:10.1038/nature08788.PMID 20075857.S2CID 205219740.
  13. ^Son J, Shen SS, Margueron R, Reinberg D (2013)."Nucleosome-binding activities within JARID2 and EZH1 regulate the function of PRC2 on chromatin".Genes & Development.27 (24):2663–77.doi:10.1101/gad.225888.113.PMC 3877756.PMID 24352422.
  14. ^abJung J, Mysliwiec MR, Lee Y (2005)."Roles of Jumonji in mouse embryonic development".Developmental Dynamics.232 (1):21–32.doi:10.1002/dvdy.20204.PMID 15580614.S2CID 31338749.
  15. ^Motoyama J, Kitajima K, Kojima M, Kondo S, Takeuchi T (1997). "Organogenesis of the liver, thymus and spleen is affected in jumonji mutant mice".Mechanisms of Development.66 (1–2):27–37.doi:10.1016/s0925-4773(97)00082-8.PMID 9376320.S2CID 6531281.
  16. ^Takeuchi T, Yamazaki Y, Katoh-Fukui Y, Tsuchiya R, Kondo S, Motoyama J, Higashinakagawa T (1995)."Gene trap capture of a novel mouse gene, jumonji, required for neural tube formation".Genes & Development.9 (10):1211–22.doi:10.1101/gad.9.10.1211.PMID 7758946.
  17. ^Mysliwiec MR, Chen J, Powers PA, Bartley CR, Schneider MD, Lee Y (2000)."Generation of a conditional null allele of jumonji".Genesis.44 (9):407–11.doi:10.1002/dvg.20221.PMC 2002517.PMID 16900512.

Further reading

[edit]

External links

[edit]

This article incorporates text from theUnited States National Library of Medicine, which is in thepublic domain.

(1) Basic domains
(1.1) Basicleucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3)bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2)Zinc finger DNA-binding domains
(2.1)Nuclear receptor(Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3.1)Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3)Fork head /winged helix
(3.4)Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4)β-Scaffold factors with minor groove contacts
(4.1)Rel homology region
(4.2)STAT
(4.3) p53-like
(4.4)MADS box
(4.6)TATA-binding proteins
(4.7)High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3)Pocket domain
(0.5)AP-2/EREBP-related factors
(0.6) Miscellaneous
1.14.11:2-oxoglutarate
1.14.13:NADH orNADPH
1.14.14: reducedflavin orflavoprotein
1.14.15: reducediron–sulfur protein
1.14.16: reducedpteridine (BH4 dependent)
1.14.17: reducedascorbate
1.14.18-19: other
1.14.99 - miscellaneous
Activity
Regulation
Classification
Kinetics
Types
Portal:
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