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Integrin beta 7

From Wikipedia, the free encyclopedia

ITGB7
Available structures
PDBOrtholog search:PDBeRCSB
List of PDB id codes

2BRQ,3V4P,3V4V

Identifiers
AliasesITGB7, integrin subunit beta 7
External IDsOMIM:147559;MGI:96616;HomoloGene:20247;GeneCards:ITGB7;OMA:ITGB7 - orthologs
Gene location (Human)
Chromosome 12 (human)
Chr.Chromosome 12 (human)[1]
Chromosome 12 (human)
Genomic location for ITGB7
Genomic location for ITGB7
Band12q13.13Start53,191,323bp[1]
End53,207,282bp[1]
Gene location (Mouse)
Chromosome 15 (mouse)
Chr.Chromosome 15 (mouse)[2]
Chromosome 15 (mouse)
Genomic location for ITGB7
Genomic location for ITGB7
Band15 F2|15 57.39 cMStart102,124,430bp[2]
End102,140,379bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • granulocyte

  • lymph node

  • bone marrow cells

  • blood

  • spleen

  • cecum

  • appendix

  • mononuclear cell

  • monocyte

  • trachea
Top expressed in
  • blood

  • mesenteric lymph nodes

  • granulocyte

  • spleen

  • thymus

  • morula

  • morula

  • corneal stroma

  • bone marrow

  • subcutaneous adipose tissue
More reference expression data
BioGPS
More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo /QuickGO
Orthologs
SpeciesHumanMouse
Entrez

3695

16421

Ensembl

ENSG00000139626

ENSMUSG00000001281

UniProt

P26010

P26011

RefSeq (mRNA)

NM_000889

NM_013566

RefSeq (protein)

NP_000880

NP_038594

Location (UCSC)Chr 12: 53.19 – 53.21 MbChr 15: 102.12 – 102.14 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

Integrin beta-7 is anintegrinprotein that in humans is encoded by theITGB7gene.[5][6] It can pair withITGA4 (CD49d) to form theheterodimeric integrinreceptor α4β7, or withITGAE (CD103) to form αEβ7.[7]

Structure

[edit]

Like all integrin subunits, β7 is a highly flexible, membrane-bound, extracellular protein that must pair with an α subunit for stability. The molecule's flexibility allows it to dynamically regulate its affinity forligand through conformational changes.[8] Beginning with the apical end of the protein, farthest from the cell membrane, the β7 is composed of a head and upper legs, collectively known as the headpiece, lower legs, atransmembrane domain and acytoplasmic tail. The top of the head is the I-like domain, sometimes called the βI domain, which, in combination with the α subunit, binds ligand. Just below this is the hybrid domain, a portion of which isN-terminal to the I-like domain. Below the hybrid domain is the PSI domain, which completes the headpiece. The lower legs consist ofEGF domains 1-4 and the β tail domain. Finally there is a transmembrane domain, and theC-terminal cytoplasmic tail.[9]

Interactions

[edit]

ITGB7 has been shown tointeract withEED.[10]

References

[edit]
  1. ^abcGRCh38: Ensembl release 89: ENSG00000139626Ensembl, May 2017
  2. ^abcGRCm38: Ensembl release 89: ENSMUSG00000001281Ensembl, May 2017
  3. ^"Human PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^"Mouse PubMed Reference:".National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^Erle DJ, Rüegg C, Sheppard D, Pytela R (Jun 1991)."Complete amino acid sequence of an integrin beta subunit (beta 7) identified in leukocytes".The Journal of Biological Chemistry.266 (17):11009–16.doi:10.1016/S0021-9258(18)99120-9.PMID 2040616.
  6. ^"Entrez Gene: ITGB7 integrin, beta 7".
  7. ^Byron A, Humphries JD, Askari JA, Craig SE, Mould AP, Humphries MJ (Nov 2009)."Anti-integrin monoclonal antibodies".Journal of Cell Science.122 (Pt 22):4009–11.doi:10.1242/jcs.056770.PMC 3329622.PMID 19910492.
  8. ^Carman CV, Springer TA (Oct 2003). "Integrin avidity regulation: are changes in affinity and conformation underemphasized?".Current Opinion in Cell Biology.15 (5):547–56.doi:10.1016/j.ceb.2003.08.003.PMID 14519389.
  9. ^Yu Y, Zhu J, Mi LZ, Walz T, Sun H, Chen J, Springer TA (Jan 2012)."Structural specializations of α(4)β(7), an integrin that mediates rolling adhesion".The Journal of Cell Biology.196 (1):131–46.doi:10.1083/jcb.201110023.PMC 3255974.PMID 22232704.
  10. ^Rietzler M, Bittner M, Kolanus W, Schuster A, Holzmann B (Oct 1998)."The human WD repeat protein WAIT-1 specifically interacts with the cytoplasmic tails of beta7-integrins".The Journal of Biological Chemistry.273 (42):27459–66.doi:10.1074/jbc.273.42.27459.PMID 9765275.

Further reading

[edit]

External links

[edit]
PDB gallery
  • 2brq: CRYSTAL STRUCTURE OF THE FILAMIN A REPEAT 21 COMPLEXED WITH THE INTEGRIN BETA7 CYTOPLASMIC TAIL PEPTIDE
    2brq: CRYSTAL STRUCTURE OF THE FILAMIN A REPEAT 21 COMPLEXED WITH THE INTEGRIN BETA7 CYTOPLASMIC TAIL PEPTIDE
Alpha
Beta
Dimers
Cytoadhesin receptor:
Fibrinogen receptor:
Fibronectin receptor:
Leukocyte-adhesion receptor:
Very late antigen receptor:
Vitronectin receptor:
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