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Incertae sedis

From Wikipedia, the free encyclopedia
Term to indicate an uncertain taxonomic position

"Colostethus" ruthveni, a species offrog that is placedincertae sedis in the familyDendrobatidae
New World vultures, such as theCalifornia condor, were placedincertae sedis within the classAves until the recognition of the new orderCathartiformes.
Plumalina plumaria Hall, 1858 (6.3 cm tall),Upper Devonian of westernNew York State, US. Workers usually assign this organism to thehydrozoans (phylumCnidaria, classHydrozoa) or the gorgonarians (phylum Cnidaria, classAnthozoa, order Gorgonaria), but it is probably safest to refer to it asincertae sedis.[1]
Thevaranopids, a mysterious family oftetrapods, had controversial relationships with many other land tetrapods. Paleolontologists have mostly assigned them in the past aseupelycosaurian synapsids. Others have placed them asbasalneodiapsids. A compromise is to place them asAmniotaincertae sedis.

Incertae sedis (Latin for 'of uncertain placement')[2] orproblematica is a term used for ataxonomic group whose broader relationships are unknown or undefined.[3] Alternatively, such groups are frequently referred to as "enigmatic taxa".[4] In the system ofopen nomenclature, uncertainty at specific taxonomic levels is indicated byincertae familiae (of uncertain family),incerti subordinis (of uncertain suborder),incerti ordinis (of uncertain order) and similar terms.[5]

Examples

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In formal nomenclature

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When formally naming a taxon, uncertainty about its taxonomic classification can be problematic. TheInternational Code of Nomenclature for algae, fungi, and plants, stipulates that "species and subdivisions of genera must be assigned to genera, and infraspecific taxa must be assigned to species, because their names are combinations", but ranks higher than thegenus may be assignedincertae sedis.[15]

Reason for use

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Poor description

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This excerpt from a 2007scientific paper aboutcrustaceans of theKuril–Kamchatka Trench and theJapan Trench describes typical circumstances through which this category is applied in discussing:[16]

...the removal of many genera from new and existing families into a state of incertae sedis. Their reduced status was attributed largely to poor or inadequate descriptions but it was accepted that some of the vagueness in the analysis was due to insufficient character states. It is also evident that a proportion of the characters used in the analysis, or their given states for particular taxa, were inappropriate or invalid. Additional complexity, and factors that have misled earlier authorities, are intrusion by extensivehomoplasies, apparent character state reversals andconvergent evolution.

Not included in an analysis

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If a formalphylogenetic analysis is conducted that does not include a certain taxon, the authors might choose to label the taxonincertae sedis instead of guessing its placement. This is particularly common whenmolecular phylogenies are generated, since tissue for many rare organisms is hard to obtain. It is also a common scenario whenfossil taxa are included, since many fossils are defined based on partial information. For example, if the phylogeny was constructed using soft tissue andvertebrae as principal characters and the taxon in question is only known from a single tooth, it would be necessary to label itincertae sedis.[5]

Controversy

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If conflicting results exist or if there is not a consensus among researchers as to how a taxon relates to other organisms, it may be listed asincertae sedis until the conflict is resolved.[5]

Phylogenetic vs. nomenclatural uncertainty

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The termincertae sedis refers to uncertainty about phylogenetic position of a taxon, which may be expressed, among others, by using a question mark after or before a taxon name. This should be distinguished from the situation where either it is uncertain how to use a name, often because the types have been lost (nomen dubium,species inquirenda), or whether a poorly preserved specimen should be included within a given species or genus, which is often expressed using a 'cf.' (from Latinconfer, compare, before a taxon name); such a convention is especially widespread in palaeontology.[17]

In zoological nomenclature

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In zoological nomenclature, "incertae sedis" is not a nomenclatural term at allper se, but is used by taxonomists in their classifications to mean "of uncertain taxonomic position".[2]Glossary In botany, a name is not validly published if it is not accepted by the author in the same publication.[15]Article 36.1 In zoology, a name proposed conditionally may beavailable under certain conditions.[2]Articles 11 and 15 For uncertainties at lower levels, some authors have proposed a system of "open nomenclature", suggesting that question marks be used to denote a questionable assignment.[5] For example, if a new species was given thespecific epithetalbum by Anton and attributed with uncertainty toAgenus, it could be denoted "Agenus?album Anton (?Anton)"; the "(?Anton)" indicates the author that assigned the question mark.[5] So if Anton describedAgenus album, and Bruno called the assignment into doubt, this could be denoted "Agenus?album (Anton) (?Bruno)", with the parentheses around Anton because the original assignment (toAgenus) was modified (toAgenus?) by Bruno.[5] This practice is not included in theInternational Code of Zoological Nomenclature, and is used only by paleontologists.[5]

In fungal taxonomy

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In fungal taxonomy,incertae sedis is applied to taxa whose position in the hierarchy cannot be stated with confidence. For much of the discipline's history, classification rested onmorphology, and naming rules were periodically revised; changes to theICNafp adopted "one fungus, one name" and other measures to stabilise usage. DNA-based systematics, including multi-gene barcoding and model-based phylogenetics, has driven large rearrangements at genus, family, and order ranks. Even so, a sizeable residue of genera remains unplaced, including many that are morphologically well circumscribed and still listed asincertae sedis in major indexes such asSpecies Fungorum andMycoBank. Causes include limited taxon sampling, discordant signals from differentgenetic markers, missing links betweensexual andasexual morphs, and cases where a taxon simply does not match any recognised family or order.[18]

Progress is often slowed by practical constraints.Type material can be old, fragmentary, or inaccessible; loans from fungaria have tightened under biodiversity and quarantine rules, and the lack of living ex-type cultures hampers sequencing. Where fresh collections are possible,epitypes may be designated, although cautiously, since epitypification can be set aside only by formalconservation under the ICNafp. The scale of the backlog is substantial: the 2022 "Outline of Fungi and fungus-like taxa" reported about 3,185 genera asincertae sedis, including roughly 2,680 inAscomycota (around 1,477 of them not placed to any family or order) and about 420 inBasidiomycota, with smaller numbers in other groups. Continued recollection and molecular study are needed to place these taxa and to refine the fungal tree of life.[18]

See also

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References

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  1. ^"Plumalina plumaria".JSJ Geology. Retrieved20 January 2021.
  2. ^abc"Glossary".International Code of Zoological Nomenclature.International Commission on Zoological Nomenclature. Retrieved12 June 2011.
  3. ^"Frequently Asked Questions".PLANTS database.United States Department of Agriculture. Retrieved12 June 2011.
  4. ^Allaby, M. (1999).A Dictionary of Zoology. Oxford University Press. p. 704. Retrieved5 January 2013.
  5. ^abcdefgS. C. Matthews (1973)."Notes on open nomenclature and synonymy lists"(PDF).Palaeontology.16 (4):713–719. Archived from the original on 27 July 2011.
  6. ^Jürg Schönenberger;Else Marie Friis (March 2001). "Fossil flowers of ericalean affinity from the Late Cretaceous of Southern Sweden".American Journal of Botany.88 (3):467–480.Bibcode:2001AmJB...88..467S.doi:10.2307/2657112.JSTOR 2657112.PMID 11250825.
  7. ^Richard Arnold Davis; Holmes A. Semken Jr. (24 January 1975). "Fossils of uncertain affinity from the Upper Devonian of Iowa".Science.187 (4173):251–254.Bibcode:1975Sci...187..251A.doi:10.1126/science.187.4173.251.JSTOR 1739069.PMID 17838783.S2CID 39189634.
  8. ^J. V. Remsen Jr.; C. D. Cadena; A. Jaramillo; M. Nores; J. F. Pacheco; M. B. Robbins; T. S. Schulenberg; F. G. Stiles; D. F. Stotz; K. J. Zimmer (2007)."A classification of the bird species of South America".South American Classification Committee.American Ornithologists' Union. Archived fromthe original on 10 October 2007. Retrieved15 October 2007.
  9. ^J. V. Remsen Jr.; C. D. Cadena; A. Jaramillo; M. Nores; J. F. Pacheco; M. B. Robbins; T. S. Schulenberg; F. G. Stiles; D. F. Stotz; K. J. Zimmer (2011)."A classification of the bird species of South America".South American Classification Committee.American Ornithologists' Union. Archived fromthe original on 2 March 2009. Retrieved12 June 2011.
  10. ^Per Alström; Knud A. Jønsson; Jon Fjeldså; Anders Ödeen; Per G. P. Ericson; Martin Irestedt (2015)."Dramatic niche shifts and morphological change in two insular bird species".Royal Society Open Science.2 (3) 140364.Bibcode:2015RSOS....240364A.doi:10.1098/rsos.140364.PMC 4448822.PMID 26064613.
  11. ^Rebecca B. Harris; Per Alström; Anders Ödeen; Adam D. Leaché (2018). "Discordance between genomic divergence and phenotypic variation in a rapidly evolving avian genus (Motacilla)".Molecular Phylogenetics and Evolution.120:183–195.arXiv:1707.03864.Bibcode:2018MolPE.120..183H.doi:10.1016/j.ympev.2017.11.020.PMID 29246816.S2CID 3592799.
  12. ^Yamaguchi, Masashi; et al. (28 September 2012). "Prokaryote or eukaryote? A unique microorganism from the deep sea".Microscopy.61 (6):423–431.doi:10.1093/jmicro/dfs062.PMID 23024290.
  13. ^Joachim Reitner (2011). "Metallogenium". In Joachim Reitner & Volker Theil (ed.).Encyclopedia of Geobiology. Encyclopedia of Earth Sciences Series.Springer. pp. 563–565.Bibcode:2011enge.book.....R.doi:10.1007/978-1-4020-9212-1_220.ISBN 978-1-4020-9211-4.
  14. ^Seilacher, A. (1992)."Vendobionta and Psammocorallia: Lost constructions of Precambrian evolution".Journal of the Geological Society (abstract).149 (4). London, UK: Geological Society:607–613.Bibcode:1992JGSoc.149..607S.doi:10.1144/gsjgs.149.4.0607.S2CID 128681462. Retrieved21 June 2007.
  15. ^abMcNeill, J.; Barrie, F.R.; Buck, W.R.; Demoulin, V.; Greuter, W.; Hawksworth, D.L.; Herendeen, P.S.; Knapp, S.; Marhold, K.; Prado, J.; Prud'homme Van Reine, W.F.; Smith, G.F.; Wiersema, J.H.; Turland, N.J. (2012).International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. Vol. Regnum Vegetabile 154. A.R.G. Gantner Verlag KG.ISBN 978-3-87429-425-6. Retrieved28 July 2013.
  16. ^Graham J. Bird (2007)."Familyincertae cedis"(PDF).Zootaxa.1599:121–149.doi:10.11646/zootaxa.1599.1.8.
  17. ^Bengtson, Peter (January 1988)."Open Nomenclature"(PDF).Palaeontology.1 (31):223–227.
  18. ^abHyde, K.D.; Noorabadi, M.T.; Thiyagaraja, V.; He, M.Q.; Johnston, P.R.; Wijesinghe, S.N.; et al. (2024)."The 2024 Outline of Fungi and fungus-like taxa".Mycosphere.15 (1): 5146–6239 [5165–5168].doi:10.5943/mycosphere/15/1/25.hdl:11577/3540520.

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Incertae sedis
Incertae sedis
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